SMTL ID : 3d03.2 (3 other biounits)

1.9A structure of Glycerophoshphodiesterase (GpdQ) from Enterobacter aerogenes

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

4 x CO: COBALT (II) ION(Non-covalent)

CO.1: 5 residues within 4Å: Chain A: D.8, H.10, D.50, H.197 Ligands: CO.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.8, A:H.10, A:D.50, A:H.197, H2O.1 CO.2: 5 residues within 4Å: Chain A: D.50, N.80, H.156, H.195 Ligands: CO.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.50, A:H.156, A:H.195, H2O.1 CO.3: 5 residues within 4Å: Chain B: D.8, H.10, D.50, H.197 Ligands: CO.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.8, B:H.10, B:D.50, B:H.197, H2O.7 CO.4: 5 residues within 4Å: Chain B: D.50, N.80, H.156, H.195 Ligands: CO.3 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.50, B:H.156, B:H.195, H2O.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hadler, K.S. et al., Substrate-promoted formation of a catalytically competent binuclear center and regulation of reactivity in a glycerophosphodiesterase from Enterobacter aerogenes. J.Am.Chem.Soc. (2008)

Release Date

2008-10-14

Peptides

Phosphohydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphohydrolase

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