SMTL ID : 3d78.3 (2 other biounits)

Dimeric crystal structure of a pheromone binding protein mutant D35N, from apis mellifera, at pH 7.0

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x NBB: N-BUTYL-BENZENESULFONAMIDE(Non-covalent)

NBB.1: 8 residues within 4Å: Chain A: M.49, L.52, L.53, V.115, W.116, F.117, V.118 Ligands: NBB.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.52, A:L.53, A:W.116, A:F.117 Hydrogen bonds: A:W.116 pi-Stacking: A:F.56 NBB.2: 11 residues within 4Å: Chain A: W.4, P.6, V.9, L.12, L.58, M.70, L.73, L.74, P.75, F.117 Ligands: NBB.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.9, A:L.12, A:L.58, A:L.73, A:L.74, A:F.117 Hydrogen bonds: A:L.73

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 1 residues within 4Å: Chain A: N.41 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.41 Water bridges: A:N.99, A:Y.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pesenti, M.E. et al., Queen bee pheromone binding protein pH-induced domain swapping favors pheromone release. J.Mol.Biol. (2009)

Release Date

2009-05-26

Peptides

Pheromone-binding protein ASP1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Pheromone-binding protein ASP1

Related Entries With Identical Sequence