SMTL ID : 3d7r.2 (1 other biounit)

Crystal structure of a putative esterase from Staphylococcus aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

1 x BR: BROMIDE ION(Non-covalent)

BR.1: 3 residues within 4Å: Chain A: Y.292, P.293, K.294 Ligand excluded by PLIP

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: I.217, Q.225, M.268 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: V.86, R.88, Q.156 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.88, A:Q.156

10 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 4 residues within 4Å: Chain A: D.291, Y.292, K.309, Q.313 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.309, A:Q.313 pi-Cation interactions: A:Y.292 DMS.5: 8 residues within 4Å: Chain A: Y.34, L.35, L.36, R.39, S.40, V.222, Y.302 Ligands: DMS.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.36 DMS.6: 4 residues within 4Å: Chain A: F.147, Q.151, F.181, S.184 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.245 DMS.7: 6 residues within 4Å: Chain A: Y.260, Y.286, E.320, D.321, V.322, T.323 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.323, A:T.323 Salt bridges: A:E.320 pi-Cation interactions: A:Y.286 DMS.8: 8 residues within 4Å: Chain A: N.60, R.61, K.62, K.63, D.83, Q.85, Q.110, I.134 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.63 Water bridges: A:Q.85 DMS.9: 10 residues within 4Å: Chain A: F.114, R.117, L.118, K.121, P.300, I.301, Y.302, P.303, S.307, H.308 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.121 DMS.10: 4 residues within 4Å: Chain A: H.93, Q.94, I.95, D.96 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.95, A:D.96, A:D.96 Salt bridges: A:D.96 DMS.11: 9 residues within 4Å: Chain A: Y.34, L.36, R.39, S.112, F.114, I.301, Y.302 Ligands: DMS.5, GOL.14 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.112 DMS.12: 5 residues within 4Å: Chain A: I.143, D.144, A.236, N.237, L.239 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.237 Salt bridges: A:D.144 DMS.13: 4 residues within 4Å: Chain A: K.62, K.63, H.64, K.65 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.64, A:K.65

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.14: 5 residues within 4Å: Chain A: Y.34, L.35, L.36, F.114 Ligands: DMS.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.35 GOL.15: 1 residues within 4Å: Chain A: Q.190 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Battaile, K.P. et al., Crystal structure of a putative esterase from Staphylococcus aureus. To be Published

Release Date

2009-06-09

Peptides

Esterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Esterase

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