SMTL ID : 3d81.1

Sir2-S-alkylamidate complex crystal structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x SER- ARG- HIS- LYS- FZN- LEU- MET- PHE: S-alkylamidate intermediate(Non-covalent)

SER-ARG-HIS-LYS-FZN-LEU-MET-PHE.1: 31 residues within 4Å: Chain A: G.21, A.22, G.23, T.26, P.27, D.32, F.33, Q.98, H.116, I.159, V.160, F.161, F.162, G.163, E.164, N.165, L.166, L.171, G.188, S.189, S.190, V.192, V.193, Y.194, P.195, E.198, N.214, L.215, M.230, D.231, V.232 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:H.116, A:I.159, A:F.162, A:L.166, A:L.171, A:V.192, A:Y.194 Hydrogen bonds: A:A.22, A:T.26, A:T.26, A:F.33, A:F.33, A:Q.98, A:Q.98, A:N.99, A:H.116, A:G.163, A:G.163, A:E.164, A:N.165, A:L.166, A:S.190, A:S.190, A:S.190, A:V.192, A:Y.194, A:Y.194, A:N.214, A:L.215, A:V.232 Salt bridges: A:E.198

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.124, C.127, C.148, C.151 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.124, A:C.127, A:C.148, A:C.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hawse, W.F. et al., Structural insights into intermediate steps in the Sir2 deacetylation reaction. Structure (2008)

Release Date

2008-09-30

Peptides

NAD-dependent deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent deacetylase

Related Entries With Identical Sequence