SMTL ID : 3d8v.1

Crystal structure of GlmU from Mycobacterium tuberculosis in complex with uridine-diphosphate-N-acetylglucosamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-trimer

Ligands

3 x UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE(Non-covalent)

UD1.1: 21 residues within 4Å: Chain A: L.12, A.13, A.14, G.15, Q.83, P.86, L.87, G.88, T.89, A.92, S.112, G.113, D.114, Y.150, G.151, E.166, N.181, A.182, Y.209, T.211, N.239 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:T.211 Hydrogen bonds: A:A.14, A:G.15, A:Q.83, A:Q.83, A:G.88, A:T.89, A:G.113, A:D.114, A:G.151, A:E.166, A:E.166, A:N.181, A:N.239 Water bridges: A:K.26, A:T.89, A:N.239 Salt bridges: A:K.26 UD1.2: 21 residues within 4Å: Chain B: L.12, A.13, A.14, G.15, Q.83, P.86, L.87, G.88, T.89, A.92, S.112, G.113, D.114, Y.150, G.151, E.166, N.181, A.182, Y.209, T.211, N.239 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:T.211 Hydrogen bonds: B:A.14, B:G.15, B:Q.83, B:Q.83, B:G.88, B:T.89, B:G.113, B:D.114, B:G.151, B:E.166, B:E.166, B:N.181, B:N.239 Water bridges: B:K.26, B:T.89, B:N.239 Salt bridges: B:K.26 UD1.3: 21 residues within 4Å: Chain C: L.12, A.13, A.14, G.15, Q.83, P.86, L.87, G.88, T.89, A.92, S.112, G.113, D.114, Y.150, G.151, E.166, N.181, A.182, Y.209, T.211, N.239 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:T.211 Hydrogen bonds: C:A.14, C:G.15, C:Q.83, C:Q.83, C:G.88, C:T.89, C:G.113, C:D.114, C:G.151, C:E.166, C:E.166, C:N.181, C:N.239 Water bridges: C:K.26, C:T.89, C:N.239 Salt bridges: C:K.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Structure and function of GlmU from Mycobacterium tuberculosis. Acta Crystallogr.,Sect.D (2009)

Release Date

2009-03-10

Peptides

Bifunctional protein glmU: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Bifunctional protein glmU

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