SMTL ID : 3d9p.2 (1 other biounit)

Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: L.116, K.119, N.120 Chain B: P.10 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.120, B:P.10 Water bridges: A:R.71, A:N.120 Salt bridges: A:R.71, A:K.119 SO4.2: 4 residues within 4Å: Chain A: Y.40, K.41, R.87, N.90 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.90 Water bridges: A:R.87 Salt bridges: A:R.87 SO4.3: 2 residues within 4Å: Chain A: K.41, R.87 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.87 Salt bridges: A:K.41, A:R.87 SO4.4: 2 residues within 4Å: Chain A: K.124, S.125 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.125 Water bridges: A:N.121 SO4.5: 4 residues within 4Å: Chain A: P.20, Y.64, K.109 Chain B: Y.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.64 Water bridges: A:I.21 Salt bridges: A:K.109 SO4.6: 3 residues within 4Å: Chain A: Y.17, K.25, Q.28 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.28 Water bridges: A:S.13, A:S.13 Salt bridges: A:K.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Becker, R. et al., Snapshots of the RNA Processing Factor SCAF8 Bound to Different Phosphorylated Forms of the Carboxyl-terminal Domain of RNA Polymerase II. J.Biol.Chem. (2008)

Release Date

2008-06-10

Peptides

RNA-binding protein 16: A
CTD-PEPTIDE: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
Y

RNA-binding protein 16

CTD-PEPTIDE

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