SMTL ID : 3dci.1

The Structure of a putative arylesterase from Agrobacterium tumefaciens str. C58

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.192, D.228 Ligands: CL.6 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.192, A:D.228 ZN.27: 3 residues within 4Å: Chain D: H.192, D.228 Ligands: CL.32 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:H.192, D:D.228

44 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: H.66, C.98, H.99 Chain D: R.44 Ligand excluded by PLIP CL.3: 6 residues within 4Å: Chain A: D.78, D.79, H.80, C.85, R.86, N.87 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: K.115, P.116, V.117 Chain C: A.124 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: P.180, R.183, K.184 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: H.192, D.228 Ligands: ZN.1 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: K.149, L.150, H.191 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: Y.77, D.78 Chain B: H.80 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: H.80 Chain C: Y.77, D.78 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain B: P.116, V.117 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain B: K.24, K.149, L.230 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain B: R.50, P.52, D.53, P.67 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain B: Y.77, D.78 Chain C: H.80 Ligand excluded by PLIP CL.15: 5 residues within 4Å: Chain B: K.149, L.150, G.190, H.191, H.192 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain B: H.66, H.99 Chain F: R.44 Ligand excluded by PLIP CL.17: 5 residues within 4Å: Chain B: D.78, D.79, C.85, R.86, N.87 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain B: S.127, R.130 Ligand excluded by PLIP CL.20: 4 residues within 4Å: Chain C: H.66, C.98, H.99 Chain E: R.44 Ligand excluded by PLIP CL.21: 5 residues within 4Å: Chain C: K.149, L.150, G.190, H.191, H.192 Ligand excluded by PLIP CL.22: 6 residues within 4Å: Chain C: D.78, D.79, H.80, C.85, R.86, N.87 Ligand excluded by PLIP CL.23: 3 residues within 4Å: Chain C: V.159, A.160, I.172 Ligand excluded by PLIP CL.24: 4 residues within 4Å: Chain C: R.50, P.52, D.53, P.67 Ligand excluded by PLIP CL.25: 3 residues within 4Å: Chain B: A.124 Chain C: P.116, V.117 Ligand excluded by PLIP CL.28: 4 residues within 4Å: Chain A: R.44 Chain D: H.66, C.98, H.99 Ligand excluded by PLIP CL.29: 6 residues within 4Å: Chain D: D.78, D.79, H.80, C.85, R.86, N.87 Ligand excluded by PLIP CL.30: 4 residues within 4Å: Chain D: K.115, P.116, V.117 Chain F: A.124 Ligand excluded by PLIP CL.31: 3 residues within 4Å: Chain D: P.180, R.183, K.184 Ligand excluded by PLIP CL.32: 3 residues within 4Å: Chain D: H.192, D.228 Ligands: ZN.27 Ligand excluded by PLIP CL.33: 3 residues within 4Å: Chain D: K.149, L.150, H.191 Ligand excluded by PLIP CL.34: 3 residues within 4Å: Chain D: Y.77, D.78 Chain E: H.80 Ligand excluded by PLIP CL.35: 3 residues within 4Å: Chain D: H.80 Chain F: Y.77, D.78 Ligand excluded by PLIP CL.37: 2 residues within 4Å: Chain E: P.116, V.117 Ligand excluded by PLIP CL.38: 3 residues within 4Å: Chain E: K.24, K.149, L.230 Ligand excluded by PLIP CL.39: 4 residues within 4Å: Chain E: R.50, P.52, D.53, P.67 Ligand excluded by PLIP CL.40: 3 residues within 4Å: Chain E: Y.77, D.78 Chain F: H.80 Ligand excluded by PLIP CL.41: 5 residues within 4Å: Chain E: K.149, L.150, G.190, H.191, H.192 Ligand excluded by PLIP CL.42: 3 residues within 4Å: Chain C: R.44 Chain E: H.66, H.99 Ligand excluded by PLIP CL.43: 5 residues within 4Å: Chain E: D.78, D.79, C.85, R.86, N.87 Ligand excluded by PLIP CL.44: 2 residues within 4Å: Chain E: S.127, R.130 Ligand excluded by PLIP CL.46: 4 residues within 4Å: Chain B: R.44 Chain F: H.66, C.98, H.99 Ligand excluded by PLIP CL.47: 5 residues within 4Å: Chain F: K.149, L.150, G.190, H.191, H.192 Ligand excluded by PLIP CL.48: 6 residues within 4Å: Chain F: D.78, D.79, H.80, C.85, R.86, N.87 Ligand excluded by PLIP CL.49: 3 residues within 4Å: Chain F: V.159, A.160, I.172 Ligand excluded by PLIP CL.50: 4 residues within 4Å: Chain F: R.50, P.52, D.53, P.67 Ligand excluded by PLIP CL.51: 3 residues within 4Å: Chain E: A.124 Chain F: P.116, V.117 Ligand excluded by PLIP

6 x ACY: ACETIC ACID(Non-functional Binders)

ACY.10: 7 residues within 4Å: Chain A: D.31, S.32, G.71, G.72, T.111, N.112, H.209 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.111 Hydrogen bonds: A:S.32, A:S.32, A:G.72, A:N.112 Salt bridges: A:H.209 ACY.19: 7 residues within 4Å: Chain B: D.31, S.32, G.71, G.72, T.111, N.112, H.209 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:T.111 Hydrogen bonds: B:S.32, B:S.32, B:G.72, B:N.112 Salt bridges: B:H.209 ACY.26: 7 residues within 4Å: Chain C: D.31, S.32, G.71, G.72, T.111, N.112, H.209 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:T.111 Hydrogen bonds: C:S.32, C:S.32, C:G.72, C:N.112 Salt bridges: C:H.209 ACY.36: 7 residues within 4Å: Chain D: D.31, S.32, G.71, G.72, T.111, N.112, H.209 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:T.111 Hydrogen bonds: D:S.32, D:S.32, D:G.72, D:N.112 Salt bridges: D:H.209 ACY.45: 7 residues within 4Å: Chain E: D.31, S.32, G.71, G.72, T.111, N.112, H.209 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:T.111 Hydrogen bonds: E:S.32, E:S.32, E:G.72, E:N.112 Salt bridges: E:H.209 ACY.52: 7 residues within 4Å: Chain F: D.31, S.32, G.71, G.72, T.111, N.112, H.209 6 PLIP interactions: 6 interactions with chain F Hydrophobic interactions: F:T.111 Hydrogen bonds: F:S.32, F:S.32, F:G.72, F:N.112 Salt bridges: F:H.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuff, M.E. et al., The Structure of a putative arylesterase from Agrobacterium tumefaciens str. C58. TO BE PUBLISHED

Release Date

2008-09-30

Peptides

Arylesterase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Arylesterase