SMTL ID : 3dgl.1

1.8 A Crystal Structure of a Non-biological Protein with Bound ATP in a Novel Bent Conformation

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.25, C.28, C.48, C.51 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.25, A:C.28, A:C.48, A:C.51

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 9 residues within 4Å: Chain A: D.34, Y.45, N.46, M.47, C.48, F.52, Y.63, H.64, G.65 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Y.45, A:N.46, A:M.47, A:M.47, A:G.65 Water bridges: A:K.36, A:K.36, A:R.43, A:Y.45 Salt bridges: A:K.36 pi-Stacking: A:Y.45, A:F.52

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 3 residues within 4Å: Chain A: W.35, V.37 Ligands: PEG.5 No protein-ligand interaction detected (PLIP) PEG.4: 1 residues within 4Å: Chain A: R.23 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.23 PEG.5: 5 residues within 4Å: Chain A: L.16, Y.20, W.35, L.42 Ligands: PEG.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.16 Water bridges: A:K.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simmons, C.R. et al., A synthetic protein selected for ligand binding affinity mediates ATP hydrolysis. Acs Chem.Biol. (2009)

Release Date

2009-06-30

Peptides

ATP Binding Protein-DX: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATP Binding Protein-DX

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