SMTL ID : 3dht.1

The Crystal Structure Determination of Rat (rattus norvegicus) Hemoglobin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.98 Å

Oligo State

hetero-2-2-mer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 15 residues within 4Å: Chain A: Y.42, F.43, H.45, H.58, K.61, V.62, A.65, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101 17 PLIP interactions: 16 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:F.43, A:F.43, A:K.61, A:K.61, A:A.65, A:L.83, A:L.83, A:L.86, A:L.91, A:V.93 Salt bridges: A:H.45, A:H.58, A:K.61, A:K.61 pi-Cation interactions: A:H.58 Metal complexes: A:H.87, H2O.1 HEM.2: 14 residues within 4Å: Chain B: Y.41, F.42, F.45, H.63, K.66, V.67, L.88, H.92, L.96, V.98, N.102, F.103, L.106, L.141 16 PLIP interactions: 15 interactions with chain B, 1 Ligand-Water interactions, Hydrophobic interactions: B:Y.41, B:F.42, B:F.42, B:K.66, B:V.67, B:L.88, B:L.96, B:L.96, B:V.98, B:L.106, B:L.141 Salt bridges: B:H.63, B:K.66 pi-Stacking: B:H.63 Metal complexes: B:H.92, H2O.1 HEM.3: 15 residues within 4Å: Chain C: Y.42, F.43, H.45, H.58, K.61, V.62, A.65, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101 17 PLIP interactions: 16 interactions with chain C, 1 Ligand-Water interactions, Hydrophobic interactions: C:F.43, C:F.43, C:K.61, C:K.61, C:A.65, C:L.83, C:L.83, C:L.86, C:L.91, C:V.93 Salt bridges: C:H.45, C:H.58, C:K.61, C:K.61 pi-Cation interactions: C:H.58 Metal complexes: C:H.87, H2O.1 HEM.4: 14 residues within 4Å: Chain D: Y.41, F.42, F.45, H.63, K.66, V.67, L.88, H.92, L.96, V.98, N.102, F.103, L.106, L.141 16 PLIP interactions: 15 interactions with chain D, 1 Ligand-Water interactions, Hydrophobic interactions: D:Y.41, D:F.42, D:F.42, D:K.66, D:V.67, D:L.88, D:L.96, D:L.96, D:V.98, D:L.106, D:L.141 Salt bridges: D:H.63, D:K.66 pi-Stacking: D:H.63 Metal complexes: D:H.92, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neelagandan, K. et al., The Crystal Structure Determination of Rat (rattus norvegicus) Hemoglobin. To be Published

Release Date

2009-06-30

Peptides

Hemoglobin subunit alpha-1/2: AC
Hemoglobin subunit beta-1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Hemoglobin subunit alpha-1/2

Hemoglobin subunit beta-1

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