SMTL ID : 3dje.2 (1 other biounit)

Crystal structure of the deglycating enzyme fructosamine oxidase from Aspergillus fumigatus (Amadoriase II) in complex with FSA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.1: 34 residues within 4Å: Chain A: V.12, G.13, A.14, G.15, T.16, W.17, L.36, D.37, P.38, S.43, I.45, S.46, A.47, G.48, K.53, V.54, G.185, V.187, C.216, A.217, G.218, S.220, F.224, W.236, C.335, W.336, C.337, A.362, G.364, R.365, G.366, F.367, K.368 Ligands: FSA.2 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:W.236 Hydrogen bonds: A:T.16, A:T.16, A:W.17, A:S.43, A:S.43, A:I.45, A:A.47, A:G.48, A:K.53, A:V.54, A:V.54, A:V.187, A:V.187, A:S.220, A:G.364, A:R.365, A:G.366, A:F.367, A:K.368, A:K.368 Water bridges: A:G.15, A:G.18, A:G.218, A:G.218, A:A.219, A:S.220, A:Q.223, A:Q.223, A:A.362 pi-Cation interactions: A:K.53

1 x FSA: 1-S-(carboxymethyl)-1-thio-beta-D-fructopyranose(Non-covalent)

FSA.2: 12 residues within 4Å: Chain A: V.54, Y.60, W.236, F.258, F.264, E.280, R.343, G.364, R.365, K.368, R.411 Ligands: FAD.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Y.60, A:E.280, A:E.280, A:R.411, A:R.411 Water bridges: A:R.112, A:R.112, A:R.112, A:R.112, A:R.112, A:R.343, A:K.368 Salt bridges: A:K.368

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 7 residues within 4Å: Chain A: P.306, K.307, E.308, D.423, V.424, K.425, E.426 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.308, A:E.308, A:K.425, A:E.426 Water bridges: A:E.426

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collard, F. et al., Crystal structure of the deglycating enzyme fructosamine oxidase (FAOX-II). To be Published

Release Date

2008-07-22

Peptides

Fructosyl amine: oxygen oxidoreductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Fructosyl amine: oxygen oxidoreductase

Related Entries With Identical Sequence