SMTL ID : 3dme.1

Crystal structure of conserved exported protein from Bordetella pertussis. NorthEast Structural Genomics target BeR141

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 36 residues within 4Å: Chain A: I.10, G.11, G.13, V.14, V.15, G.16, A.33, E.34, A.35, T.43, S.44, R.46, N.47, S.48, E.49, V.50, H.52, T.171, P.172, L.173, A.204, A.205, G.206, H.208, Y.234, I.315, R.316, I.348, E.349, S.350, P.351, G.352, L.353, T.354 Chain B: A.278 Ligands: TLA.2 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:N.47, A:R.316 Hydrogen bonds: A:G.13, A:V.14, A:V.15, A:G.16, A:A.35, A:T.43, A:T.43, A:S.44, A:S.44, A:N.47, A:N.47, A:S.48, A:E.49, A:V.50, A:V.50, A:L.173, A:L.173, A:Y.234, A:E.349, A:G.352, A:L.353, A:T.354, A:T.354 Water bridges: A:E.34, A:T.41, A:T.41, A:G.42, A:L.207, A:L.207, A:L.207, A:R.215, A:R.215 FAD.4: 37 residues within 4Å: Chain A: A.278 Chain B: I.10, G.11, G.13, V.14, V.15, G.16, A.33, E.34, A.35, G.42, T.43, S.44, R.46, N.47, S.48, E.49, V.50, H.52, T.171, P.172, L.173, A.204, A.205, G.206, L.212, Y.234, I.315, R.316, I.348, E.349, S.350, P.351, G.352, L.353, T.354 Ligands: TLA.5 32 PLIP interactions: 32 interactions with chain B Hydrophobic interactions: B:Y.234, B:R.316 Hydrogen bonds: B:G.13, B:V.14, B:V.15, B:G.16, B:A.35, B:T.43, B:S.44, B:S.44, B:N.47, B:S.48, B:V.50, B:V.50, B:L.173, B:L.173, B:E.349, B:G.352, B:L.353, B:T.354 Water bridges: B:G.40, B:T.41, B:G.42, B:T.43, B:S.44, B:N.47, B:E.49, B:E.49, B:L.207, B:L.207, B:R.215, B:R.215

3 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.2: 8 residues within 4Å: Chain A: S.48, H.52, Y.248, H.259, P.272, R.316, S.350 Ligands: FAD.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.48, A:S.48, A:S.350, A:S.350 Water bridges: A:H.52, A:R.316 Salt bridges: A:H.52, A:H.259, A:R.316 TLA.3: 8 residues within 4Å: Chain A: H.208, G.211, R.215, E.227 Chain B: H.208, G.211, R.215, E.227 19 PLIP interactions: 12 interactions with chain A, 7 interactions with chain B Hydrogen bonds: A:H.208, A:E.227, A:E.227, B:R.215 Water bridges: A:R.215, A:R.215, A:E.227, A:E.227, A:E.227, A:E.227, A:E.227, B:H.208, B:R.215, B:R.215, B:E.227 Salt bridges: A:H.208, A:R.215, B:H.208, B:R.215 TLA.5: 8 residues within 4Å: Chain B: S.48, H.52, Y.248, H.259, P.272, R.316, S.350 Ligands: FAD.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.48, B:S.48, B:H.259, B:S.350, B:S.350 Salt bridges: B:H.52, B:H.259, B:R.316

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seetharaman, J. et al., Crystal structure of conserved exported protein from Bordetella pertussis. NorthEast Structural Genomics target BeR141. To be Published

Release Date

2008-08-26

Peptides

conserved exported protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

conserved exported protein