SMTL ID : 3dod.1

Crystal Structure of PLP Bound 7,8-Diaminopelargonic Acid Synthase in Bacillus subtilis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 11 residues within 4Å: Chain A: W.54, S.112, G.113, A.114, E.217, D.251, V.253, A.254, K.280 Chain B: H.316, S.317 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:V.253, A:K.280 Hydrogen bonds: A:G.113, A:A.114, B:S.317, B:S.317 Water bridges: A:E.217, B:S.317, B:Y.318 Salt bridges: A:K.280, B:H.316 PLP.2: 11 residues within 4Å: Chain A: H.316, S.317 Chain B: W.54, S.112, G.113, A.114, E.217, D.251, V.253, A.254, K.280 11 PLIP interactions: 5 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:S.317, A:S.317, B:G.113, B:A.114 Water bridges: A:S.317, A:Y.318, B:E.217 Salt bridges: A:H.316, B:K.280 Hydrophobic interactions: B:V.253, B:K.280

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dey, S. et al., Structural characterization of the Mycobacterium tuberculosis biotin biosynthesis enzymes 7,8-diaminopelargonic acid synthase and dethiobiotin synthetase . Biochemistry (2010)

Release Date

2009-06-23

Peptides

Adenosylmethionine-8-amino-7-oxononanoate aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Adenosylmethionine-8-amino-7-oxononanoate aminotransferase

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