SMTL ID : 3dzi.1 (1 other biounit)

Crystal structure of human CD38 extracellular domain, ribose-5'-phosphate intermediate/GTP complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x RGT: 2-amino-9-{5-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-ribofuranosyl}-9H-purin-6-yl 5-O-phosphono-beta-D-ribofuranoside(Non-covalent)

RGT.1: 18 residues within 4Å: Chain A: L.86, W.87, S.88, R.89, K.91, L.107, E.108, D.117, D.137, W.138, R.139, V.147, W.151, S.155, S.182, T.183, F.184, E.188 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:W.87, A:W.87, A:S.88, A:R.89, A:K.91, A:R.139, A:S.155, A:T.183, A:T.183, A:F.184 Water bridges: A:W.87, A:R.89, A:K.91, A:L.107, A:D.118, A:D.118 Salt bridges: A:R.89, A:E.108, A:D.117 pi-Stacking: A:W.151, A:W.151, A:W.151 pi-Cation interactions: A:W.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Q. et al., Covalent and Noncovalent Intermediates of an NAD Utilizing Enzyme, Human CD38. Chem.Biol. (2008)

Release Date

2008-11-04

Peptides

ADP-ribosyl cyclase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADP-ribosyl cyclase 1

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