SMTL ID : 3dzu.1

Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with BVT.13, 9-cis Retinoic Acid and NCOA2 Peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-2-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.140, C.143, C.157, C.160 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.140, A:C.143, A:C.157, A:C.160 ZN.2: 4 residues within 4Å: Chain A: C.176, C.182, C.192, C.195 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.176, A:C.182, A:C.192, A:C.195 ZN.4: 5 residues within 4Å: Chain B: C.53, C.56, G.57, C.70, C.73 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.53, B:C.56, B:C.70, B:C.73 ZN.5: 5 residues within 4Å: Chain B: C.90, L.92, C.94, C.104, C.107 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.90, B:C.94, B:C.104, B:C.107

1 x 9CR: (9cis)-retinoic acid(Non-covalent)

9CR.3: 14 residues within 4Å: Chain A: I.273, A.276, A.277, Q.280, N.311, I.315, F.318, R.321, L.331, V.347, I.350, C.437, H.440, L.441 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.273, A:A.276, A:I.315, A:F.318, A:F.318, A:F.318, A:L.331, A:V.347, A:I.350, A:H.440, A:L.441 Hydrogen bonds: A:S.317 Salt bridges: A:R.321

1 x PLB: 2-[(2,4-DICHLOROBENZOYL)AMINO]-5-(PYRIMIDIN-2-YLOXY)BENZOIC ACID(Non-covalent)

PLB.6: 13 residues within 4Å: Chain B: D.202, R.222, I.223, G.226, C.227, R.230, S.231, L.275, L.282, I.283, S.284, M.290, M.306 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.223, B:R.230, B:L.275, B:I.283 Hydrogen bonds: B:D.202, B:G.226, B:S.284 Salt bridges: B:R.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chandra, V. et al., Structure of the intact PPAR-gamma-RXR- nuclear receptor complex on DNA. Nature (2008)

Release Date

2008-10-28

Peptides

Retinoic acid receptor RXR-alpha: A
Peroxisome proliferator-activated receptor gamma: B
NCOA2 Peptide: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

E
G

F
E

Retinoic acid receptor RXR-alpha

Peroxisome proliferator-activated receptor gamma

NCOA2 Peptide

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