SMTL ID : 3e0f.1

Crystal structure of a putative metal-dependent phosphoesterase (bad_1165) from bifidobacterium adolescentis atcc 15703 at 2.40 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.20, D.25, H.50, H.263 Ligands: PO4.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.25, A:D.25, A:H.50, A:H.263

2 x FE: FE (III) ION(Non-covalent)

FE.2: 5 residues within 4Å: Chain A: E.75, H.86, H.203 Ligands: FE.3, PO4.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.75, A:H.86, A:H.203 FE.3: 6 residues within 4Å: Chain A: H.18, H.20, E.75, D.261 Ligands: FE.2, PO4.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.18, A:H.20, A:E.75, A:D.261

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 11 residues within 4Å: Chain A: H.20, D.25, H.50, E.75, H.86, D.261, H.263, K.267 Ligands: ZN.1, FE.2, FE.3 5 PLIP interactions: 5 interactions with chain A Salt bridges: A:H.20, A:H.50, A:H.86, A:H.263, A:K.267 PO4.5: 5 residues within 4Å: Chain A: R.110, R.113, G.145, R.146, P.147 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.146, A:R.146 Water bridges: A:R.110, A:R.113, A:R.113 Salt bridges: A:R.110, A:R.113

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 2 residues within 4Å: Chain A: H.186, D.225 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, G.W. et al., Crystal structure of a metal-dependent phosphoesterase (YP_910028.1) from Bifidobacterium adolescentis: Computational prediction and experimental validation of phosphoesterase activity. Proteins (2011)

Release Date

2008-09-02

Peptides

Putative Metal-dependent Phosphoesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative Metal-dependent Phosphoesterase

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