SMTL ID : 3e0v.1 (1 other biounit)

Crystal structure of pyruvate kinase from Leishmania mexicana in complex with sulphate ions

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-tetramer

Ligands

28 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.90, N.92, D.124, K.279, E.281 Ligand excluded by PLIP SO4.2: 7 residues within 4Å: Chain A: T.337, Q.338, M.339, E.341, S.371, G.372, E.373 Ligand excluded by PLIP SO4.3: 3 residues within 4Å: Chain A: S.94, H.95, R.215 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain A: H.95, R.131, R.215, R.216, K.376 Ligand excluded by PLIP SO4.5: 8 residues within 4Å: Chain A: S.441, N.442, T.443, G.444, R.445, S.446, A.522, D.523 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain A: K.494, R.497 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain A: S.42, Q.43 Chain B: Q.43 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain B: R.90, N.92, S.94, K.279 Ligand excluded by PLIP SO4.11: 7 residues within 4Å: Chain B: T.337, Q.338, M.339, E.341, S.371, G.372, E.373 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain B: S.94, H.95, G.96, R.215 Ligand excluded by PLIP SO4.13: 7 residues within 4Å: Chain B: N.219, L.220, P.221, V.225, R.255, Q.284, E.309 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain B: H.95, R.131, R.216 Ligand excluded by PLIP SO4.15: 8 residues within 4Å: Chain B: S.441, N.442, T.443, G.444, R.445, S.446, A.522, D.523 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain B: N.442, R.497 Ligand excluded by PLIP SO4.17: 7 residues within 4Å: Chain C: R.90, N.92, D.124, K.279, E.281, S.371 Ligands: SO4.21 Ligand excluded by PLIP SO4.18: 7 residues within 4Å: Chain C: T.337, Q.338, M.339, E.341, S.371, G.372, E.373 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain C: S.94, H.95, G.96, R.215 Ligand excluded by PLIP SO4.20: 7 residues within 4Å: Chain C: N.219, L.220, P.221, V.225, R.255, Q.284, E.309 Ligand excluded by PLIP SO4.21: 5 residues within 4Å: Chain C: H.95, R.131, R.216, K.376 Ligands: SO4.17 Ligand excluded by PLIP SO4.22: 8 residues within 4Å: Chain C: S.441, N.442, T.443, G.444, R.445, S.446, A.522, D.523 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain C: N.442, K.494, R.497 Ligand excluded by PLIP SO4.24: 2 residues within 4Å: Chain C: Q.43 Chain D: Q.43 Ligand excluded by PLIP SO4.25: 6 residues within 4Å: Chain D: R.90, N.92, S.94, D.124, K.279, E.281 Ligand excluded by PLIP SO4.26: 6 residues within 4Å: Chain D: Q.338, M.339, E.341, S.371, G.372, E.373 Ligand excluded by PLIP SO4.27: 3 residues within 4Å: Chain D: H.95, G.96, R.215 Ligand excluded by PLIP SO4.28: 5 residues within 4Å: Chain D: N.219, R.255, N.282, Q.284, E.309 Ligand excluded by PLIP SO4.29: 4 residues within 4Å: Chain D: H.95, R.131, R.216, K.376 Ligand excluded by PLIP SO4.30: 8 residues within 4Å: Chain D: S.441, N.442, T.443, G.444, R.445, S.446, A.522, D.523 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 1 residues within 4Å: Chain A: S.97 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.97 GOL.8: 8 residues within 4Å: Chain A: N.219, L.220, C.223, V.225, R.255, N.282, Q.284, E.309 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.220, A:C.223, A:Q.284, A:E.309 Water bridges: A:G.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tulloch, L.B. et al., Sulphate removal induces a major conformational change in Leishmania mexicana pyruvate kinase in the crystalline state. J.Mol.Biol. (2008)

Release Date

2008-08-19

Peptides

Pyruvate kinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Pyruvate kinase

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