SMTL ID : 3e1n.1

Crystal structure of E. coli Bacterioferritin (BFR) after a 65 minute (aerobic) exposure to FE(II) revealing a possible MU-OXO bridge/MU-Hydroxy bridged DIIRON intermediate at the ferroxidase centre. (FE(III)-O-FE(III)-BFR).

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-24-mer

Ligands

32 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: R.117 Chain J: R.117, I.121 Chain P: R.117 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain B: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.10: 5 residues within 4Å: Chain B: R.117 Chain C: R.117, I.121 Chain H: R.117, I.121 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain C: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain D: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain E: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain F: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.28: 5 residues within 4Å: Chain F: R.117 Chain I: R.117, I.121 Chain K: R.117, I.121 Ligand excluded by PLIP SO4.31: 3 residues within 4Å: Chain G: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.34: 4 residues within 4Å: Chain G: R.117 Chain L: R.117 Chain Q: R.117, I.121 Ligand excluded by PLIP SO4.37: 3 residues within 4Å: Chain H: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.41: 3 residues within 4Å: Chain I: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.46: 3 residues within 4Å: Chain J: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.50: 3 residues within 4Å: Chain K: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.54: 3 residues within 4Å: Chain L: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.59: 3 residues within 4Å: Chain M: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.62: 4 residues within 4Å: Chain D: R.117 Chain M: R.117 Chain V: R.117, I.121 Ligand excluded by PLIP SO4.65: 3 residues within 4Å: Chain N: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.68: 5 residues within 4Å: Chain N: R.117 Chain O: R.117, I.121 Chain T: R.117, I.121 Ligand excluded by PLIP SO4.70: 3 residues within 4Å: Chain O: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.74: 3 residues within 4Å: Chain P: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.79: 3 residues within 4Å: Chain Q: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.83: 3 residues within 4Å: Chain R: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.86: 5 residues within 4Å: Chain R: R.117 Chain U: R.117, I.121 Chain W: R.117, I.121 Ligand excluded by PLIP SO4.89: 3 residues within 4Å: Chain S: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.92: 4 residues within 4Å: Chain E: R.117, I.121 Chain S: R.117 Chain X: R.117 Ligand excluded by PLIP SO4.95: 3 residues within 4Å: Chain T: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.99: 3 residues within 4Å: Chain U: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.104: 3 residues within 4Å: Chain V: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.108: 3 residues within 4Å: Chain W: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.112: 3 residues within 4Å: Chain X: G.145, L.146, Q.147 Ligand excluded by PLIP

48 x FE2: FE (II) ION(Non-covalent)

FE2.2: 6 residues within 4Å: Chain A: E.18, E.51, H.54, E.127 Ligands: FE2.3, UNK.5 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:E.18, A:E.51, A:H.54, A:E.127, UNK.5 FE2.3: 6 residues within 4Å: Chain A: E.51, E.94, E.127, H.130 Ligands: FE2.2, UNK.5 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:E.51, A:E.94, A:E.127, A:H.130, UNK.5 FE2.8: 6 residues within 4Å: Chain B: E.18, E.51, H.54, E.127 Ligands: FE2.9, UNK.11 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: B:E.18, B:E.51, B:H.54, B:E.127, UNK.11 FE2.9: 6 residues within 4Å: Chain B: E.51, E.94, E.127, H.130 Ligands: FE2.8, UNK.11 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: B:E.51, B:E.94, B:E.127, B:H.130, UNK.11 FE2.13: 6 residues within 4Å: Chain C: E.18, E.51, H.54, E.127 Ligands: FE2.14, UNK.15 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Ligand interactions Metal complexes: C:E.18, C:E.51, C:H.54, C:E.127, UNK.15 FE2.14: 6 residues within 4Å: Chain C: E.51, E.94, E.127, H.130 Ligands: FE2.13, UNK.15 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Ligand interactions Metal complexes: C:E.51, C:E.94, C:E.127, C:H.130, UNK.15 FE2.17: 6 residues within 4Å: Chain D: E.18, E.51, H.54, E.127 Ligands: FE2.18, UNK.20 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Ligand interactions Metal complexes: D:E.18, D:E.51, D:H.54, D:E.127, UNK.20 FE2.18: 6 residues within 4Å: Chain D: E.51, E.94, E.127, H.130 Ligands: FE2.17, UNK.20 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Ligand interactions Metal complexes: D:E.51, D:E.94, D:E.127, D:H.130, UNK.20 FE2.22: 6 residues within 4Å: Chain E: E.18, E.51, H.54, E.127 Ligands: FE2.23, UNK.24 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:E.18, E:E.18, E:E.51, E:H.54, E:E.127 FE2.23: 6 residues within 4Å: Chain E: E.51, E.94, E.127, H.130 Ligands: FE2.22, UNK.24 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Ligand interactions Metal complexes: E:E.94, E:E.94, E:E.127, E:H.130, UNK.24 FE2.26: 6 residues within 4Å: Chain F: E.18, E.51, H.54, E.127 Ligands: FE2.27, UNK.30 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Ligand interactions Metal complexes: F:E.18, F:E.51, F:H.54, F:E.127, UNK.30 FE2.27: 6 residues within 4Å: Chain F: E.51, E.94, E.127, H.130 Ligands: FE2.26, UNK.30 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Ligand interactions Metal complexes: F:E.51, F:E.94, F:E.127, F:H.130, UNK.30 FE2.32: 6 residues within 4Å: Chain G: E.18, E.51, H.54, E.127 Ligands: FE2.33, UNK.35 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Ligand interactions Metal complexes: G:E.18, G:E.51, G:H.54, G:E.127, UNK.35 FE2.33: 6 residues within 4Å: Chain G: E.51, E.94, E.127, H.130 Ligands: FE2.32, UNK.35 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:E.51, G:E.94, G:E.94, G:E.127, G:H.130 FE2.38: 6 residues within 4Å: Chain H: E.18, E.51, H.54, E.127 Ligands: FE2.39, UNK.40 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:E.18, H:E.18, H:E.51, H:H.54, H:E.127 FE2.39: 6 residues within 4Å: Chain H: E.51, E.94, E.127, H.130 Ligands: FE2.38, UNK.40 5 PLIP interactions: 4 interactions with chain H, 1 Ligand-Ligand interactions Metal complexes: H:E.51, H:E.94, H:E.127, H:H.130, UNK.40 FE2.42: 6 residues within 4Å: Chain I: E.18, E.51, H.54, E.127 Ligands: FE2.43, UNK.44 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:E.18, I:E.18, I:E.51, I:H.54, I:E.127 FE2.43: 6 residues within 4Å: Chain I: E.51, E.94, E.127, H.130 Ligands: FE2.42, UNK.44 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:E.51, I:E.94, I:E.94, I:E.127, I:H.130 FE2.47: 6 residues within 4Å: Chain J: E.18, E.51, H.54, E.127 Ligands: FE2.48, UNK.49 5 PLIP interactions: 4 interactions with chain J, 1 Ligand-Ligand interactions Metal complexes: J:E.18, J:E.51, J:H.54, J:E.127, UNK.49 FE2.48: 6 residues within 4Å: Chain J: E.51, E.94, E.127, H.130 Ligands: FE2.47, UNK.49 5 PLIP interactions: 4 interactions with chain J, 1 Ligand-Ligand interactions Metal complexes: J:E.51, J:E.94, J:E.127, J:H.130, UNK.49 FE2.51: 6 residues within 4Å: Chain K: E.18, E.51, H.54, E.127 Ligands: FE2.52, UNK.53 5 PLIP interactions: 4 interactions with chain K, 1 Ligand-Ligand interactions Metal complexes: K:E.18, K:E.51, K:H.54, K:E.127, UNK.53 FE2.52: 6 residues within 4Å: Chain K: E.51, E.94, E.127, H.130 Ligands: FE2.51, UNK.53 5 PLIP interactions: 4 interactions with chain K, 1 Ligand-Ligand interactions Metal complexes: K:E.51, K:E.94, K:E.127, K:H.130, UNK.53 FE2.55: 6 residues within 4Å: Chain L: E.18, E.51, H.54, E.127 Ligands: FE2.56, UNK.58 5 PLIP interactions: 4 interactions with chain L, 1 Ligand-Ligand interactions Metal complexes: L:E.18, L:E.51, L:H.54, L:E.127, UNK.58 FE2.56: 6 residues within 4Å: Chain L: E.51, E.94, E.127, H.130 Ligands: FE2.55, UNK.58 5 PLIP interactions: 4 interactions with chain L, 1 Ligand-Ligand interactions Metal complexes: L:E.51, L:E.94, L:E.127, L:H.130, UNK.58 FE2.60: 6 residues within 4Å: Chain M: E.18, E.51, H.54, E.127 Ligands: FE2.61, UNK.63 5 PLIP interactions: 4 interactions with chain M, 1 Ligand-Ligand interactions Metal complexes: M:E.18, M:E.51, M:H.54, M:E.127, UNK.63 FE2.61: 6 residues within 4Å: Chain M: E.51, E.94, E.127, H.130 Ligands: FE2.60, UNK.63 5 PLIP interactions: 4 interactions with chain M, 1 Ligand-Ligand interactions Metal complexes: M:E.51, M:E.94, M:E.127, M:H.130, UNK.63 FE2.66: 6 residues within 4Å: Chain N: E.18, E.51, H.54, E.127 Ligands: FE2.67, UNK.69 5 PLIP interactions: 4 interactions with chain N, 1 Ligand-Ligand interactions Metal complexes: N:E.18, N:E.51, N:H.54, N:E.127, UNK.69 FE2.67: 6 residues within 4Å: Chain N: E.51, E.94, E.127, H.130 Ligands: FE2.66, UNK.69 5 PLIP interactions: 4 interactions with chain N, 1 Ligand-Ligand interactions Metal complexes: N:E.51, N:E.94, N:E.127, N:H.130, UNK.69 FE2.71: 6 residues within 4Å: Chain O: E.18, E.51, H.54, E.127 Ligands: FE2.72, UNK.73 5 PLIP interactions: 4 interactions with chain O, 1 Ligand-Ligand interactions Metal complexes: O:E.18, O:E.51, O:H.54, O:E.127, UNK.73 FE2.72: 6 residues within 4Å: Chain O: E.51, E.94, E.127, H.130 Ligands: FE2.71, UNK.73 5 PLIP interactions: 4 interactions with chain O, 1 Ligand-Ligand interactions Metal complexes: O:E.51, O:E.94, O:E.127, O:H.130, UNK.73 FE2.75: 6 residues within 4Å: Chain P: E.18, E.51, H.54, E.127 Ligands: FE2.76, UNK.78 5 PLIP interactions: 4 interactions with chain P, 1 Ligand-Ligand interactions Metal complexes: P:E.18, P:E.51, P:H.54, P:E.127, UNK.78 FE2.76: 6 residues within 4Å: Chain P: E.51, E.94, E.127, H.130 Ligands: FE2.75, UNK.78 5 PLIP interactions: 4 interactions with chain P, 1 Ligand-Ligand interactions Metal complexes: P:E.51, P:E.94, P:E.127, P:H.130, UNK.78 FE2.80: 6 residues within 4Å: Chain Q: E.18, E.51, H.54, E.127 Ligands: FE2.81, UNK.82 5 PLIP interactions: 5 interactions with chain Q Metal complexes: Q:E.18, Q:E.18, Q:E.51, Q:H.54, Q:E.127 FE2.81: 6 residues within 4Å: Chain Q: E.51, E.94, E.127, H.130 Ligands: FE2.80, UNK.82 5 PLIP interactions: 4 interactions with chain Q, 1 Ligand-Ligand interactions Metal complexes: Q:E.94, Q:E.94, Q:E.127, Q:H.130, UNK.82 FE2.84: 6 residues within 4Å: Chain R: E.18, E.51, H.54, E.127 Ligands: FE2.85, UNK.88 5 PLIP interactions: 5 interactions with chain R Metal complexes: R:E.18, R:E.18, R:E.51, R:H.54, R:E.127 FE2.85: 6 residues within 4Å: Chain R: E.51, E.94, E.127, H.130 Ligands: FE2.84, UNK.88 5 PLIP interactions: 4 interactions with chain R, 1 Ligand-Ligand interactions Metal complexes: R:E.51, R:E.94, R:E.127, R:H.130, UNK.88 FE2.90: 6 residues within 4Å: Chain S: E.18, E.51, H.54, E.127 Ligands: FE2.91, UNK.93 5 PLIP interactions: 4 interactions with chain S, 1 Ligand-Ligand interactions Metal complexes: S:E.18, S:E.51, S:H.54, S:E.127, UNK.93 FE2.91: 6 residues within 4Å: Chain S: E.51, E.94, E.127, H.130 Ligands: FE2.90, UNK.93 5 PLIP interactions: 5 interactions with chain S Metal complexes: S:E.51, S:E.94, S:E.94, S:E.127, S:H.130 FE2.96: 6 residues within 4Å: Chain T: E.18, E.51, H.54, E.127 Ligands: FE2.97, UNK.98 5 PLIP interactions: 5 interactions with chain T Metal complexes: T:E.18, T:E.18, T:E.51, T:H.54, T:E.127 FE2.97: 6 residues within 4Å: Chain T: E.51, E.94, E.127, H.130 Ligands: FE2.96, UNK.98 5 PLIP interactions: 4 interactions with chain T, 1 Ligand-Ligand interactions Metal complexes: T:E.51, T:E.94, T:E.127, T:H.130, UNK.98 FE2.100: 6 residues within 4Å: Chain U: E.18, E.51, H.54, E.127 Ligands: FE2.101, UNK.102 5 PLIP interactions: 4 interactions with chain U, 1 Ligand-Ligand interactions Metal complexes: U:E.18, U:E.51, U:H.54, U:E.127, UNK.102 FE2.101: 6 residues within 4Å: Chain U: E.51, E.94, E.127, H.130 Ligands: FE2.100, UNK.102 5 PLIP interactions: 4 interactions with chain U, 1 Ligand-Ligand interactions Metal complexes: U:E.51, U:E.94, U:E.127, U:H.130, UNK.102 FE2.105: 6 residues within 4Å: Chain V: E.18, E.51, H.54, E.127 Ligands: FE2.106, UNK.107 5 PLIP interactions: 5 interactions with chain V Metal complexes: V:E.18, V:E.18, V:E.51, V:H.54, V:E.127 FE2.106: 6 residues within 4Å: Chain V: E.51, E.94, E.127, H.130 Ligands: FE2.105, UNK.107 5 PLIP interactions: 4 interactions with chain V, 1 Ligand-Ligand interactions Metal complexes: V:E.51, V:E.94, V:E.127, V:H.130, UNK.107 FE2.109: 6 residues within 4Å: Chain W: E.18, E.51, H.54, E.127 Ligands: FE2.110, UNK.111 5 PLIP interactions: 4 interactions with chain W, 1 Ligand-Ligand interactions Metal complexes: W:E.18, W:E.51, W:H.54, W:E.127, UNK.111 FE2.110: 6 residues within 4Å: Chain W: E.51, E.94, E.127, H.130 Ligands: FE2.109, UNK.111 5 PLIP interactions: 4 interactions with chain W, 1 Ligand-Ligand interactions Metal complexes: W:E.51, W:E.94, W:E.127, W:H.130, UNK.111 FE2.113: 6 residues within 4Å: Chain X: E.18, E.51, H.54, E.127 Ligands: FE2.114, UNK.116 5 PLIP interactions: 4 interactions with chain X, 1 Ligand-Ligand interactions Metal complexes: X:E.18, X:E.51, X:H.54, X:E.127, UNK.116 FE2.114: 6 residues within 4Å: Chain X: E.51, E.94, E.127, H.130 Ligands: FE2.113, UNK.116 5 PLIP interactions: 4 interactions with chain X, 1 Ligand-Ligand interactions Metal complexes: X:E.51, X:E.94, X:E.127, X:H.130, UNK.116

24 x UNK: UNKNOWN(Non-functional Binders)

UNK.5: 7 residues within 4Å: Chain A: E.18, A.21, E.51, E.94, E.127 Ligands: FE2.2, FE2.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.51 UNK.11: 5 residues within 4Å: Chain B: E.18, E.51, E.127 Ligands: FE2.8, FE2.9 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.51 UNK.15: 6 residues within 4Å: Chain C: E.18, A.21, E.51, E.127 Ligands: FE2.13, FE2.14 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.51 UNK.20: 6 residues within 4Å: Chain D: E.18, A.21, E.51, E.127 Ligands: FE2.17, FE2.18 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.18 UNK.24: 6 residues within 4Å: Chain E: E.18, A.21, E.51, E.127 Ligands: FE2.22, FE2.23 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:E.18 UNK.30: 7 residues within 4Å: Chain F: E.18, A.21, E.51, E.94, E.127 Ligands: FE2.26, FE2.27 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:E.51 UNK.35: 6 residues within 4Å: Chain G: E.18, A.21, E.51, E.127 Ligands: FE2.32, FE2.33 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:E.51 UNK.40: 6 residues within 4Å: Chain H: A.21, E.51, E.94, E.127 Ligands: FE2.38, FE2.39 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:E.51 UNK.44: 6 residues within 4Å: Chain I: E.18, A.21, E.51, E.127 Ligands: FE2.42, FE2.43 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:E.127 UNK.49: 7 residues within 4Å: Chain J: E.18, A.21, E.51, E.94, E.127 Ligands: FE2.47, FE2.48 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:E.51 UNK.53: 6 residues within 4Å: Chain K: E.18, A.21, E.51, E.127 Ligands: FE2.51, FE2.52 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:E.18 UNK.58: 6 residues within 4Å: Chain L: E.18, A.21, E.51, E.127 Ligands: FE2.55, FE2.56 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:E.94 UNK.63: 7 residues within 4Å: Chain M: E.18, A.21, E.51, E.94, E.127 Ligands: FE2.60, FE2.61 2 PLIP interactions: 2 interactions with chain M Water bridges: M:E.94, M:E.127 UNK.69: 5 residues within 4Å: Chain N: E.18, E.51, E.127 Ligands: FE2.66, FE2.67 1 PLIP interactions: 1 interactions with chain N Hydrogen bonds: N:E.94 UNK.73: 6 residues within 4Å: Chain O: E.18, A.21, E.51, E.127 Ligands: FE2.71, FE2.72 1 PLIP interactions: 1 interactions with chain O Hydrogen bonds: O:E.127 UNK.78: 6 residues within 4Å: Chain P: E.18, A.21, E.51, E.127 Ligands: FE2.75, FE2.76 1 PLIP interactions: 1 interactions with chain P Hydrogen bonds: P:E.51 UNK.82: 6 residues within 4Å: Chain Q: E.18, A.21, E.51, E.127 Ligands: FE2.80, FE2.81 1 PLIP interactions: 1 interactions with chain Q Hydrogen bonds: Q:E.51 UNK.88: 7 residues within 4Å: Chain R: E.18, A.21, E.51, E.94, E.127 Ligands: FE2.84, FE2.85 1 PLIP interactions: 1 interactions with chain R Hydrogen bonds: R:E.127 UNK.93: 6 residues within 4Å: Chain S: E.18, A.21, E.51, E.127 Ligands: FE2.90, FE2.91 1 PLIP interactions: 1 interactions with chain S Hydrogen bonds: S:E.127 UNK.98: 6 residues within 4Å: Chain T: A.21, E.51, E.94, E.127 Ligands: FE2.96, FE2.97 1 PLIP interactions: 1 interactions with chain T Hydrogen bonds: T:E.127 UNK.102: 6 residues within 4Å: Chain U: E.18, A.21, E.51, E.127 Ligands: FE2.100, FE2.101 1 PLIP interactions: 1 interactions with chain U Hydrogen bonds: U:E.51 UNK.107: 7 residues within 4Å: Chain V: E.18, A.21, E.51, E.94, E.127 Ligands: FE2.105, FE2.106 1 PLIP interactions: 1 interactions with chain V Hydrogen bonds: V:E.51 UNK.111: 6 residues within 4Å: Chain W: E.18, A.21, E.51, E.127 Ligands: FE2.109, FE2.110 1 PLIP interactions: 1 interactions with chain W Hydrogen bonds: W:E.94 UNK.116: 6 residues within 4Å: Chain X: E.18, A.21, E.51, E.127 Ligands: FE2.113, FE2.114 1 PLIP interactions: 1 interactions with chain X Hydrogen bonds: X:E.127

12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.6: 17 residues within 4Å: Chain A: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, D.56 Chain B: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 17 PLIP interactions: 8 interactions with chain A, 9 interactions with chain B, Hydrophobic interactions: A:L.19, A:I.22, A:F.26, A:F.26, A:I.49, A:M.52, A:A.55, B:L.19, B:I.22, B:F.26, B:F.26, B:F.26, B:Y.45, B:I.49, B:M.52 Salt bridges: A:K.53, B:K.53 HEM.19: 16 residues within 4Å: Chain C: I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain D: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 16 PLIP interactions: 10 interactions with chain D, 6 interactions with chain C, Hydrophobic interactions: D:L.19, D:I.22, D:F.26, D:F.26, D:F.26, D:Y.45, D:I.49, D:I.49, D:M.52, C:I.22, C:F.26, C:F.26, C:M.52, C:A.55 Salt bridges: D:K.53, C:K.53 HEM.29: 16 residues within 4Å: Chain E: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain F: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 17 PLIP interactions: 8 interactions with chain E, 9 interactions with chain F, Hydrophobic interactions: E:L.19, E:F.26, E:F.26, E:Y.45, E:M.52, E:A.55, E:D.56, F:L.19, F:I.22, F:I.22, F:F.26, F:F.26, F:F.26, F:Y.45, F:I.49, F:M.52 Salt bridges: E:K.53 HEM.36: 16 residues within 4Å: Chain G: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain H: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 19 PLIP interactions: 10 interactions with chain G, 9 interactions with chain H, Hydrophobic interactions: G:L.19, G:I.22, G:I.22, G:F.26, G:F.26, G:Y.45, G:I.49, G:M.52, G:A.55, H:L.19, H:I.22, H:F.26, H:F.26, H:Y.45, H:M.52 Salt bridges: G:K.53, H:K.53 Hydrogen bonds: H:Y.45, H:Y.45 HEM.45: 17 residues within 4Å: Chain I: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, D.56 Chain J: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 18 PLIP interactions: 10 interactions with chain I, 8 interactions with chain J, Hydrophobic interactions: I:L.19, I:I.22, I:I.22, I:F.26, I:F.26, I:I.49, I:I.49, I:M.52, I:A.55, J:L.19, J:I.22, J:F.26, J:F.26, J:F.26, J:Y.45, J:I.49, J:M.52 Salt bridges: I:K.53 HEM.57: 15 residues within 4Å: Chain K: I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain L: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 16 PLIP interactions: 10 interactions with chain L, 6 interactions with chain K, Hydrophobic interactions: L:L.19, L:I.22, L:F.26, L:F.26, L:F.26, L:Y.45, L:I.49, L:I.49, L:M.52, K:I.22, K:F.26, K:F.26, K:M.52, K:A.55 Salt bridges: L:K.53, K:K.53 HEM.64: 17 residues within 4Å: Chain M: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, D.56 Chain N: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 17 PLIP interactions: 9 interactions with chain N, 8 interactions with chain M, Hydrophobic interactions: N:L.19, N:I.22, N:F.26, N:F.26, N:F.26, N:Y.45, N:I.49, N:M.52, M:L.19, M:I.22, M:F.26, M:F.26, M:I.49, M:M.52, M:A.55 Salt bridges: N:K.53, M:K.53 HEM.77: 16 residues within 4Å: Chain O: I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain P: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53 16 PLIP interactions: 6 interactions with chain O, 10 interactions with chain P, Hydrophobic interactions: O:I.22, O:F.26, O:F.26, O:M.52, O:A.55, P:L.19, P:I.22, P:F.26, P:F.26, P:F.26, P:Y.45, P:I.49, P:I.49, P:M.52 Salt bridges: O:K.53, P:K.53 HEM.87: 16 residues within 4Å: Chain Q: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain R: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 17 PLIP interactions: 9 interactions with chain R, 8 interactions with chain Q, Hydrophobic interactions: R:L.19, R:I.22, R:I.22, R:F.26, R:F.26, R:F.26, R:Y.45, R:I.49, R:M.52, Q:L.19, Q:F.26, Q:F.26, Q:Y.45, Q:M.52, Q:A.55, Q:D.56 Salt bridges: Q:K.53 HEM.94: 16 residues within 4Å: Chain S: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain T: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 18 PLIP interactions: 10 interactions with chain S, 8 interactions with chain T, Hydrophobic interactions: S:L.19, S:I.22, S:I.22, S:F.26, S:F.26, S:Y.45, S:I.49, S:M.52, S:A.55, T:L.19, T:I.22, T:F.26, T:F.26, T:Y.45, T:M.52 Salt bridges: S:K.53, T:K.53 Hydrogen bonds: T:Y.45 HEM.103: 17 residues within 4Å: Chain U: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, K.53, A.55, D.56 Chain V: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 18 PLIP interactions: 8 interactions with chain V, 10 interactions with chain U, Hydrophobic interactions: V:L.19, V:I.22, V:F.26, V:F.26, V:F.26, V:Y.45, V:I.49, V:M.52, U:L.19, U:I.22, U:I.22, U:F.26, U:F.26, U:I.49, U:I.49, U:M.52, U:A.55 Salt bridges: U:K.53 HEM.115: 15 residues within 4Å: Chain W: I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain X: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 16 PLIP interactions: 10 interactions with chain X, 6 interactions with chain W, Hydrophobic interactions: X:L.19, X:I.22, X:F.26, X:F.26, X:F.26, X:Y.45, X:I.49, X:I.49, X:M.52, W:I.22, W:F.26, W:F.26, W:M.52, W:A.55 Salt bridges: X:K.53, W:K.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crow, A. et al., Structural basis for iron mineralization by bacterioferritin. J.Am.Chem.Soc. (2009)

Release Date

2009-05-05

Peptides

BACTERIOFERRITIN: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
A

N
B

O
C

P
D

Q
E

R
F

S
G

T
H

U
I

V
J

W
K

X
L

BACTERIOFERRITIN

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