SMTL ID : 3e1p.1

Crystal structure of E. coli Bacterioferritin (BFR) in which the Ferroxidase centre is inhibited with ZN(II) and high occupancy iron is bound within the cavity.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-24-mer

Ligands

32 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.5: 6 residues within 4Å: Chain A: R.117, I.121 Chain J: R.117, I.121 Chain P: R.117, I.121 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain B: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.11: 6 residues within 4Å: Chain B: R.117, I.121 Chain C: R.117, I.121 Chain H: R.117, I.121 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain C: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain D: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain E: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain F: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.29: 6 residues within 4Å: Chain F: R.117, I.121 Chain I: R.117, I.121 Chain K: R.117, I.121 Ligand excluded by PLIP SO4.31: 3 residues within 4Å: Chain G: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.35: 5 residues within 4Å: Chain G: R.117, I.121 Chain L: R.117, I.121 Chain Q: R.117 Ligand excluded by PLIP SO4.36: 3 residues within 4Å: Chain H: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.41: 3 residues within 4Å: Chain I: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.45: 3 residues within 4Å: Chain J: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.50: 3 residues within 4Å: Chain K: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.55: 3 residues within 4Å: Chain L: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.59: 3 residues within 4Å: Chain M: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.63: 6 residues within 4Å: Chain D: R.117, I.121 Chain M: R.117, I.121 Chain V: R.117, I.121 Ligand excluded by PLIP SO4.65: 3 residues within 4Å: Chain N: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.69: 6 residues within 4Å: Chain N: R.117, I.121 Chain O: R.117, I.121 Chain T: R.117, I.121 Ligand excluded by PLIP SO4.70: 3 residues within 4Å: Chain O: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.75: 3 residues within 4Å: Chain P: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.79: 3 residues within 4Å: Chain Q: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.83: 3 residues within 4Å: Chain R: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.87: 6 residues within 4Å: Chain R: R.117, I.121 Chain U: R.117, I.121 Chain W: R.117, I.121 Ligand excluded by PLIP SO4.89: 3 residues within 4Å: Chain S: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.93: 5 residues within 4Å: Chain E: R.117 Chain S: R.117, I.121 Chain X: R.117, I.121 Ligand excluded by PLIP SO4.94: 3 residues within 4Å: Chain T: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.99: 3 residues within 4Å: Chain U: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.103: 3 residues within 4Å: Chain V: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.108: 3 residues within 4Å: Chain W: G.145, L.146, Q.147 Ligand excluded by PLIP SO4.113: 3 residues within 4Å: Chain X: G.145, L.146, Q.147 Ligand excluded by PLIP

48 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.18, A:E.18, A:E.51, A:H.54, A:E.127 ZN.3: 4 residues within 4Å: Chain A: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.51, A:E.94, A:E.94, A:E.127, A:H.130 ZN.8: 4 residues within 4Å: Chain B: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.18, B:E.18, B:E.51, B:H.54, B:E.127 ZN.9: 4 residues within 4Å: Chain B: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.51, B:E.94, B:E.94, B:E.127, B:H.130 ZN.13: 4 residues within 4Å: Chain C: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.18, C:E.18, C:E.51, C:H.54, C:E.127 ZN.14: 4 residues within 4Å: Chain C: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.51, C:E.94, C:E.94, C:E.127, C:H.130 ZN.18: 5 residues within 4Å: Chain D: E.18, E.51, H.54, E.127 Ligands: ZN.19 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.18, D:E.18, D:E.51, D:H.54, D:E.127 ZN.19: 5 residues within 4Å: Chain D: E.51, E.94, E.127, H.130 Ligands: ZN.18 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.51, D:E.94, D:E.94, D:E.127, D:H.130 ZN.22: 5 residues within 4Å: Chain E: E.18, E.51, H.54, E.127 Ligands: ZN.23 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:E.18, E:E.18, E:E.51, E:H.54, E:E.127 ZN.23: 5 residues within 4Å: Chain E: E.51, E.94, E.127, H.130 Ligands: ZN.22 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:E.51, E:E.94, E:E.94, E:E.127, E:H.130 ZN.26: 4 residues within 4Å: Chain F: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:E.18, F:E.18, F:E.51, F:H.54, F:E.127 ZN.27: 4 residues within 4Å: Chain F: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:E.51, F:E.94, F:E.94, F:E.127, F:H.130 ZN.32: 4 residues within 4Å: Chain G: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:E.18, G:E.18, G:E.51, G:H.54, G:E.127 ZN.33: 4 residues within 4Å: Chain G: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:E.51, G:E.94, G:E.94, G:E.127, G:H.130 ZN.37: 4 residues within 4Å: Chain H: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:E.18, H:E.18, H:E.51, H:H.54, H:E.127 ZN.38: 4 residues within 4Å: Chain H: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:E.51, H:E.94, H:E.94, H:E.127, H:H.130 ZN.42: 4 residues within 4Å: Chain I: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:E.18, I:E.18, I:E.51, I:H.54, I:E.127 ZN.43: 4 residues within 4Å: Chain I: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:E.51, I:E.94, I:E.94, I:E.127, I:H.130 ZN.46: 4 residues within 4Å: Chain J: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:E.18, J:E.18, J:E.51, J:H.54, J:E.127 ZN.47: 4 residues within 4Å: Chain J: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:E.51, J:E.94, J:E.94, J:E.127, J:H.130 ZN.51: 4 residues within 4Å: Chain K: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:E.18, K:E.18, K:E.51, K:H.54, K:E.127 ZN.52: 4 residues within 4Å: Chain K: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:E.51, K:E.94, K:E.94, K:E.127, K:H.130 ZN.56: 4 residues within 4Å: Chain L: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:E.18, L:E.18, L:E.51, L:H.54, L:E.127 ZN.57: 4 residues within 4Å: Chain L: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:E.51, L:E.94, L:E.94, L:E.127, L:H.130 ZN.60: 4 residues within 4Å: Chain M: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain M Metal complexes: M:E.18, M:E.18, M:E.51, M:H.54, M:E.127 ZN.61: 4 residues within 4Å: Chain M: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain M Metal complexes: M:E.51, M:E.94, M:E.94, M:E.127, M:H.130 ZN.66: 4 residues within 4Å: Chain N: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain N Metal complexes: N:E.18, N:E.18, N:E.51, N:H.54, N:E.127 ZN.67: 4 residues within 4Å: Chain N: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain N Metal complexes: N:E.51, N:E.94, N:E.94, N:E.127, N:H.130 ZN.71: 4 residues within 4Å: Chain O: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain O Metal complexes: O:E.18, O:E.18, O:E.51, O:H.54, O:E.127 ZN.72: 4 residues within 4Å: Chain O: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain O Metal complexes: O:E.51, O:E.94, O:E.94, O:E.127, O:H.130 ZN.76: 5 residues within 4Å: Chain P: E.18, E.51, H.54, E.127 Ligands: ZN.77 5 PLIP interactions: 5 interactions with chain P Metal complexes: P:E.18, P:E.18, P:E.51, P:H.54, P:E.127 ZN.77: 5 residues within 4Å: Chain P: E.51, E.94, E.127, H.130 Ligands: ZN.76 5 PLIP interactions: 5 interactions with chain P Metal complexes: P:E.51, P:E.94, P:E.94, P:E.127, P:H.130 ZN.80: 5 residues within 4Å: Chain Q: E.18, E.51, H.54, E.127 Ligands: ZN.81 5 PLIP interactions: 5 interactions with chain Q Metal complexes: Q:E.18, Q:E.18, Q:E.51, Q:H.54, Q:E.127 ZN.81: 5 residues within 4Å: Chain Q: E.51, E.94, E.127, H.130 Ligands: ZN.80 5 PLIP interactions: 5 interactions with chain Q Metal complexes: Q:E.51, Q:E.94, Q:E.94, Q:E.127, Q:H.130 ZN.84: 4 residues within 4Å: Chain R: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain R Metal complexes: R:E.18, R:E.18, R:E.51, R:H.54, R:E.127 ZN.85: 4 residues within 4Å: Chain R: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain R Metal complexes: R:E.51, R:E.94, R:E.94, R:E.127, R:H.130 ZN.90: 4 residues within 4Å: Chain S: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain S Metal complexes: S:E.18, S:E.18, S:E.51, S:H.54, S:E.127 ZN.91: 4 residues within 4Å: Chain S: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain S Metal complexes: S:E.51, S:E.94, S:E.94, S:E.127, S:H.130 ZN.95: 4 residues within 4Å: Chain T: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain T Metal complexes: T:E.18, T:E.18, T:E.51, T:H.54, T:E.127 ZN.96: 4 residues within 4Å: Chain T: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain T Metal complexes: T:E.51, T:E.94, T:E.94, T:E.127, T:H.130 ZN.100: 4 residues within 4Å: Chain U: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain U Metal complexes: U:E.18, U:E.18, U:E.51, U:H.54, U:E.127 ZN.101: 4 residues within 4Å: Chain U: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain U Metal complexes: U:E.51, U:E.94, U:E.94, U:E.127, U:H.130 ZN.104: 4 residues within 4Å: Chain V: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain V Metal complexes: V:E.18, V:E.18, V:E.51, V:H.54, V:E.127 ZN.105: 4 residues within 4Å: Chain V: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain V Metal complexes: V:E.51, V:E.94, V:E.94, V:E.127, V:H.130 ZN.109: 4 residues within 4Å: Chain W: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain W Metal complexes: W:E.18, W:E.18, W:E.51, W:H.54, W:E.127 ZN.110: 4 residues within 4Å: Chain W: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain W Metal complexes: W:E.51, W:E.94, W:E.94, W:E.127, W:H.130 ZN.114: 4 residues within 4Å: Chain X: E.18, E.51, H.54, E.127 5 PLIP interactions: 5 interactions with chain X Metal complexes: X:E.18, X:E.18, X:E.51, X:H.54, X:E.127 ZN.115: 4 residues within 4Å: Chain X: E.51, E.94, E.127, H.130 5 PLIP interactions: 5 interactions with chain X Metal complexes: X:E.51, X:E.94, X:E.94, X:E.127, X:H.130

24 x FE2: FE (II) ION(Non-covalent)

FE2.4: 2 residues within 4Å: Chain A: H.46, D.50 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.46, A:D.50, H2O.2, H2O.2 FE2.10: 2 residues within 4Å: Chain B: H.46, D.50 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.46, B:D.50 FE2.15: 2 residues within 4Å: Chain C: H.46, D.50 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.46, C:D.50, H2O.8, H2O.8 FE2.20: 2 residues within 4Å: Chain D: H.46, D.50 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:H.46, D:D.50 FE2.24: 2 residues within 4Å: Chain E: H.46, D.50 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:H.46, E:D.50 FE2.28: 2 residues within 4Å: Chain F: H.46, D.50 3 PLIP interactions: 2 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.46, F:D.50, H2O.15 FE2.34: 2 residues within 4Å: Chain G: H.46, D.50 3 PLIP interactions: 2 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:H.46, G:D.50, H2O.18 FE2.39: 2 residues within 4Å: Chain H: H.46, D.50 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:H.46, H:D.50 FE2.44: 2 residues within 4Å: Chain I: H.46, D.50 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:H.46, I:D.50 FE2.48: 2 residues within 4Å: Chain J: H.46, D.50 3 PLIP interactions: 2 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:H.46, J:D.50, H2O.27 FE2.53: 2 residues within 4Å: Chain K: H.46, D.50 3 PLIP interactions: 2 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:H.46, K:D.50, H2O.29 FE2.58: 2 residues within 4Å: Chain L: H.46, D.50 3 PLIP interactions: 2 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:H.46, L:D.50, H2O.32 FE2.62: 2 residues within 4Å: Chain M: H.46, D.50 4 PLIP interactions: 2 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:H.46, M:D.50, H2O.35, H2O.36 FE2.68: 2 residues within 4Å: Chain N: H.46, D.50 2 PLIP interactions: 2 interactions with chain N Metal complexes: N:H.46, N:D.50 FE2.73: 2 residues within 4Å: Chain O: H.46, D.50 4 PLIP interactions: 2 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:H.46, O:D.50, H2O.41, H2O.41 FE2.78: 2 residues within 4Å: Chain P: H.46, D.50 2 PLIP interactions: 2 interactions with chain P Metal complexes: P:H.46, P:D.50 FE2.82: 2 residues within 4Å: Chain Q: H.46, D.50 2 PLIP interactions: 2 interactions with chain Q Metal complexes: Q:H.46, Q:D.50 FE2.86: 2 residues within 4Å: Chain R: H.46, D.50 3 PLIP interactions: 2 interactions with chain R, 1 Ligand-Water interactions Metal complexes: R:H.46, R:D.50, H2O.48 FE2.92: 2 residues within 4Å: Chain S: H.46, D.50 3 PLIP interactions: 2 interactions with chain S, 1 Ligand-Water interactions Metal complexes: S:H.46, S:D.50, H2O.52 FE2.97: 2 residues within 4Å: Chain T: H.46, D.50 2 PLIP interactions: 2 interactions with chain T Metal complexes: T:H.46, T:D.50 FE2.102: 2 residues within 4Å: Chain U: H.46, D.50 2 PLIP interactions: 2 interactions with chain U Metal complexes: U:H.46, U:D.50 FE2.106: 2 residues within 4Å: Chain V: H.46, D.50 3 PLIP interactions: 2 interactions with chain V, 1 Ligand-Water interactions Metal complexes: V:H.46, V:D.50, H2O.60 FE2.111: 2 residues within 4Å: Chain W: H.46, D.50 3 PLIP interactions: 2 interactions with chain W, 1 Ligand-Water interactions Metal complexes: W:H.46, W:D.50, H2O.62 FE2.116: 2 residues within 4Å: Chain X: H.46, D.50 3 PLIP interactions: 2 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:H.46, X:D.50, H2O.65

12 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.6: 16 residues within 4Å: Chain A: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain B: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 16 PLIP interactions: 8 interactions with chain B, 8 interactions with chain A, Hydrophobic interactions: B:L.19, B:I.22, B:F.26, B:F.26, B:Y.45, B:I.49, B:M.52, A:L.19, A:I.22, A:I.22, A:F.26, A:I.49, A:M.52, A:A.55 Salt bridges: B:K.53, A:K.53 HEM.16: 16 residues within 4Å: Chain C: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain D: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 16 PLIP interactions: 8 interactions with chain D, 8 interactions with chain C, Hydrophobic interactions: D:L.19, D:I.22, D:F.26, D:F.26, D:Y.45, D:I.49, D:M.52, C:L.19, C:I.22, C:I.22, C:F.26, C:I.49, C:M.52, C:A.55 Salt bridges: D:K.53, C:K.53 HEM.30: 16 residues within 4Å: Chain E: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain F: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 18 PLIP interactions: 10 interactions with chain E, 8 interactions with chain F, Hydrophobic interactions: E:L.19, E:I.22, E:I.22, E:F.26, E:F.26, E:Y.45, E:I.49, E:M.52, E:A.55, F:L.19, F:I.22, F:F.26, F:F.26, F:Y.45, F:I.49, F:M.52 Salt bridges: E:K.53, F:K.53 HEM.40: 17 residues within 4Å: Chain G: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain H: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, D.56 19 PLIP interactions: 9 interactions with chain G, 10 interactions with chain H, Hydrophobic interactions: G:L.19, G:I.22, G:I.22, G:F.26, G:I.49, G:M.52, G:A.55, H:L.19, H:I.22, H:I.22, H:F.26, H:F.26, H:Y.45, H:I.49, H:I.49, H:M.52 Water bridges: G:K.53 Salt bridges: G:K.53, H:K.53 HEM.49: 16 residues within 4Å: Chain I: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain J: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 17 PLIP interactions: 9 interactions with chain I, 8 interactions with chain J, Hydrophobic interactions: I:L.19, I:I.22, I:I.22, I:F.26, I:F.26, I:I.49, I:M.52, I:A.55, J:L.19, J:I.22, J:F.26, J:F.26, J:Y.45, J:I.49, J:M.52 Salt bridges: I:K.53, J:K.53 HEM.54: 16 residues within 4Å: Chain K: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain L: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 17 PLIP interactions: 9 interactions with chain K, 8 interactions with chain L, Hydrophobic interactions: K:L.19, K:I.22, K:I.22, K:F.26, K:F.26, K:I.49, K:M.52, K:A.55, L:L.19, L:I.22, L:F.26, L:F.26, L:Y.45, L:I.49, L:M.52 Salt bridges: K:K.53, L:K.53 HEM.64: 16 residues within 4Å: Chain M: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain N: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 16 PLIP interactions: 8 interactions with chain M, 8 interactions with chain N, Hydrophobic interactions: M:L.19, M:I.22, M:I.22, M:F.26, M:I.49, M:M.52, M:A.55, N:L.19, N:I.22, N:F.26, N:F.26, N:Y.45, N:I.49, N:M.52 Salt bridges: M:K.53, N:K.53 HEM.74: 16 residues within 4Å: Chain O: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain P: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 16 PLIP interactions: 8 interactions with chain O, 8 interactions with chain P, Hydrophobic interactions: O:L.19, O:I.22, O:I.22, O:F.26, O:I.49, O:M.52, O:A.55, P:L.19, P:I.22, P:F.26, P:F.26, P:Y.45, P:I.49, P:M.52 Salt bridges: O:K.53, P:K.53 HEM.88: 16 residues within 4Å: Chain Q: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain R: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 18 PLIP interactions: 10 interactions with chain Q, 8 interactions with chain R, Hydrophobic interactions: Q:L.19, Q:I.22, Q:I.22, Q:F.26, Q:F.26, Q:Y.45, Q:I.49, Q:M.52, Q:A.55, R:L.19, R:I.22, R:F.26, R:F.26, R:Y.45, R:I.49, R:M.52 Salt bridges: Q:K.53, R:K.53 HEM.98: 17 residues within 4Å: Chain S: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain T: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, D.56 19 PLIP interactions: 10 interactions with chain T, 9 interactions with chain S, Hydrophobic interactions: T:L.19, T:I.22, T:I.22, T:F.26, T:F.26, T:Y.45, T:I.49, T:I.49, T:M.52, S:L.19, S:I.22, S:I.22, S:F.26, S:I.49, S:M.52, S:A.55 Salt bridges: T:K.53, S:K.53 Water bridges: S:K.53 HEM.107: 16 residues within 4Å: Chain U: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain V: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 17 PLIP interactions: 9 interactions with chain U, 8 interactions with chain V, Hydrophobic interactions: U:L.19, U:I.22, U:I.22, U:F.26, U:F.26, U:I.49, U:M.52, U:A.55, V:L.19, V:I.22, V:F.26, V:F.26, V:Y.45, V:I.49, V:M.52 Salt bridges: U:K.53, V:K.53 HEM.112: 16 residues within 4Å: Chain W: L.19, I.22, N.23, F.26, Y.45, I.49, M.52, A.55, D.56 Chain X: L.19, I.22, N.23, F.26, Y.45, I.49, M.52 17 PLIP interactions: 8 interactions with chain X, 9 interactions with chain W, Hydrophobic interactions: X:L.19, X:I.22, X:F.26, X:F.26, X:Y.45, X:I.49, X:M.52, W:L.19, W:I.22, W:I.22, W:F.26, W:F.26, W:I.49, W:M.52, W:A.55 Salt bridges: X:K.53, W:K.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crow, A. et al., Structural basis for iron mineralization by bacterioferritin. J.Am.Chem.Soc. (2009)

Release Date

2009-05-05

Peptides

BACTERIOFERRITIN: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
A

N
B

O
C

P
D

Q
E

R
F

S
G

T
H

U
I

V
J

W
K

X
L

BACTERIOFERRITIN

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