SMTL ID : 3e2i.1

Crystal structure of Thymidine Kinase from S. aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.165, C.168, S.170, C.203, H.206 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.165, A:C.168, A:C.203, A:H.206 ZN.3: 5 residues within 4Å: Chain B: C.165, C.168, S.170, C.203, H.206 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.165, B:C.168, B:C.203, B:H.206 ZN.5: 5 residues within 4Å: Chain C: C.165, C.168, S.170, C.203, H.206 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.165, C:C.168, C:C.203, C:H.206 ZN.7: 5 residues within 4Å: Chain D: C.165, C.168, S.170, C.203, H.206 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.165, D:C.168, D:C.203, D:H.206

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: S.36, M.37, F.38, S.39, G.40, K.41, S.42, E.109 Chain B: R.51 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.36, A:F.38, A:S.39, A:G.40, A:K.41, A:K.41, A:S.42, A:S.42, B:R.51 Water bridges: A:E.43, A:E.43 GOL.4: 9 residues within 4Å: Chain A: R.51 Chain B: S.36, M.37, F.38, S.39, G.40, K.41, S.42, E.109 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.36, B:F.38, B:S.39, B:G.40, B:K.41, B:K.41, B:S.42, B:S.42, A:R.51 Water bridges: B:E.43, B:E.43 GOL.6: 9 residues within 4Å: Chain C: S.36, M.37, F.38, S.39, G.40, K.41, S.42, E.109 Chain D: R.51 10 PLIP interactions: 9 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:S.36, C:F.38, C:S.39, C:G.40, C:K.41, C:K.41, C:S.42, C:S.42, D:R.51 Water bridges: C:E.43 GOL.8: 9 residues within 4Å: Chain C: R.51 Chain D: S.36, M.37, F.38, S.39, G.40, K.41, S.42, E.109 10 PLIP interactions: 9 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:S.36, D:F.38, D:S.39, D:G.40, D:K.41, D:K.41, D:S.42, D:S.42, C:R.51 Water bridges: D:E.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lam, R. et al., Crystal structure of Thymidine Kinase from S. aureus. To be Published

Release Date

2009-08-11

Peptides

Thymidine kinase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Thymidine kinase