SMTL ID : 3e34.1 (2 other biounits)

Protein farnesyltransferase complexed with FPP and ethylenediamine-scaffold inhibitor 10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 Ligands: ED1.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.2: 13 residues within 4Å: Chain A: K.164, Y.166 Chain B: R.202, Y.205, H.248, G.250, Y.251, C.254, R.291, K.294, Y.300, W.303 Ligands: ED1.3 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:R.202, B:Y.205, B:Y.251 Hydrogen bonds: B:Y.300 Water bridges: B:G.290, B:L.295, B:L.295, B:Y.300 Salt bridges: B:H.248, B:R.291, B:R.291, B:K.294, B:K.294, A:K.164

1 x ED1: 3-{2'-[{[1-(tert-butoxycarbonyl)piperidin-4-yl]methyl}(2-{(4-cyanophenyl)[(1-methyl-1H-imidazol-5-yl)methyl]amino}ethyl)sulfamoyl]biphenyl-3-yl}propanoic acid(Non-covalent)

ED1.3: 19 residues within 4Å: Chain A: K.164, Y.166, Q.167 Chain B: Y.93, L.96, W.102, W.106, A.151, R.202, D.297, C.299, W.303, D.352, D.359, F.360, Y.361, H.362 Ligands: ZN.1, FPP.2 19 PLIP interactions: 14 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:W.102, B:W.106, B:A.151, B:W.303, B:Y.361, B:Y.361, A:Y.166 Hydrogen bonds: B:D.359, B:F.360, B:Y.361, A:Q.167, A:Q.167 Salt bridges: B:H.149, B:R.202 pi-Stacking: B:W.102, B:Y.361 pi-Cation interactions: B:R.202 Water bridges: A:Y.166, A:Q.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hast, M.A. et al., Structural basis for binding and selectivity of antimalarial and anticancer ethylenediamine inhibitors to protein farnesyltransferase. Chem.Biol. (2009)

Release Date

2009-03-10

Peptides

Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha: A
Protein farnesyltransferase subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

Protein farnesyltransferase subunit beta

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