SMTL ID : 3ed5.1

The crystal structure of YfnB from Bacillus subtilis subsp. subtilis str. 168

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

10 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 5 residues within 4Å: Chain A: F.21, W.56, R.73, R.95, L.98 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.73, A:R.73, A:R.95, A:R.95 Water bridges: A:Y.94, A:Y.94 FMT.2: 5 residues within 4Å: Chain A: D.13, T.125, N.126, K.158 Ligands: FMT.9 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.125, A:N.126, A:K.158, A:K.158 Water bridges: A:V.14, A:N.126 FMT.3: 4 residues within 4Å: Chain A: G.62, G.155, F.156, Q.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.157 Water bridges: A:G.62 FMT.4: 5 residues within 4Å: Chain A: E.25, Y.48, K.49, N.52, Q.53 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.25, A:N.52, A:Q.53 Water bridges: A:Y.48 FMT.5: 3 residues within 4Å: Chain A: D.67, E.68, N.71 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.71 Water bridges: A:T.65 FMT.6: 2 residues within 4Å: Chain A: K.134, R.137 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.137 FMT.7: 3 residues within 4Å: Chain A: A.26, L.27, R.30 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.30 Water bridges: A:L.27 FMT.8: 4 residues within 4Å: Chain A: T.41, D.43, M.44, Y.81 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.41, A:D.43 Water bridges: A:T.41 FMT.9: 3 residues within 4Å: Chain A: D.15, G.127 Ligands: FMT.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.15, A:T.125, A:Q.132 FMT.10: 3 residues within 4Å: Chain A: Y.166, E.169, R.170 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.170, A:R.170 Water bridges: A:N.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of YfnB from Bacillus subtilis subsp. subtilis str. 168. To be Published

Release Date

2008-09-16

Peptides

YfnB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

YfnB