SMTL ID : 3eey.4 (4 other biounits)

CRYSTAL STRUCTURE OF PUTATIVE RRNA-METHYLASE FROM Clostridium thermocellum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 20 residues within 4Å: Chain A: A.29, T.30, C.31, G.32, N.33, N.35, D.36, D.54, I.55, Q.56, G.82, H.83, Q.84, N.100, G.102, Y.103, L.104, S.112, T.113, T.117 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:N.100 Hydrogen bonds: A:T.30, A:T.30, A:N.33, A:N.35, A:N.35, A:D.36, A:D.36, A:D.36, A:I.55, A:Q.56, A:H.83, A:Q.84 Water bridges: A:R.114 pi-Stacking: A:H.83 SAM.3: 20 residues within 4Å: Chain B: A.29, T.30, C.31, G.32, N.33, G.34, N.35, D.36, D.54, I.55, Q.56, G.82, H.83, Q.84, N.100, G.102, Y.103, L.104, S.112, T.113 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:T.30, B:N.33, B:N.33, B:G.34, B:N.35, B:N.35, B:D.36, B:I.55, B:Q.56, B:H.83, B:Q.84 Water bridges: B:R.114 pi-Stacking: B:H.83

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: R.169, D.171 Chain B: R.169 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.169, B:R.169, A:R.169, A:R.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of Rrna-Methylase from Clostridium Thermocellum. To be Published

Release Date

2008-09-16

Peptides

Putative rRNA methylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
I

Putative rRNA methylase

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