SMTL ID : 3ef4.2 (2 other biounits)

Crystal structure of native pseudoazurin from Hyphomicrobium denitrificans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

monomer

Ligands

1 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.41, C.79, H.82, M.87 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.41, A:C.79, A:H.82

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain A: H.3, I.4, P.21 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.4 Water bridges: A:E.2, A:H.3 Salt bridges: A:H.3 PO4.3: 4 residues within 4Å: Chain A: P.51, E.52, N.98, Q.101 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.52, A:N.98 PO4.4: 5 residues within 4Å: Chain A: S.45, V.46, R.47, E.48, K.78 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.45, A:R.47, A:E.48 Water bridges: A:E.44, A:K.78, A:K.78, A:K.78 Salt bridges: A:K.78 PO4.5: 4 residues within 4Å: Chain A: E.44, K.58, K.78, A.80 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.44, A:E.44 Water bridges: A:N.42, A:K.58, A:K.78 Salt bridges: A:K.58, A:K.78 PO4.6: 6 residues within 4Å: Chain A: A.1, H.3, K.25, V.26, E.27, D.30 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.25, A:E.27 Salt bridges: A:H.3 PO4.7: 5 residues within 4Å: Chain A: K.25, E.27, E.72, G.94, K.95 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.25, A:E.27 Salt bridges: A:K.25, A:K.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hira, D. et al., Atomic resolution structure of pseudoazurin from the methylotrophic denitrifying bacterium Hyphomicrobium denitrificans: structural insights into its spectroscopic properties. Acta Crystallogr.,Sect.D (2009)

Release Date

2008-12-30

Peptides

Blue copper protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Blue copper protein

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