SMTL ID : 3ef5.1

Structure of the RNA pyrophosphohydrolase BdRppH in complex with dGTP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x DGT: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

DGT.1: 15 residues within 4Å: Chain A: V.24, V.25, A.26, R.40, S.45, E.51, F.52, G.54, G.55, K.56, I.97, I.99, H.115, P.133, N.136 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.97 Hydrogen bonds: A:F.52, A:F.52, A:F.52, A:K.56, A:N.136 Salt bridges: A:R.40, A:E.51, A:K.56, A:K.56, A:K.56 DGT.2: 11 residues within 4Å: Chain B: V.24, R.40, E.51, F.52, G.54, G.55, K.56, I.97, I.99, P.133, N.136 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:F.52, B:F.52, B:F.52, B:N.136 Water bridges: B:K.56, B:K.56 Salt bridges: B:R.40, B:E.51, B:K.56, B:K.56, B:K.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Messing, S.A. et al., Structure and Biological Function of the RNA Pyrophosphohydrolase BdRppH from Bdellovibrio bacteriovorus. Structure (2009)

Release Date

2009-03-24

Peptides

Probable pyrophosphohydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable pyrophosphohydrolase

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