- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)
- 26 x ZN: ZINC ION(Non-covalent)
ZN.3: 1 residues within 4Å:- Chain A: H.40
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:H.40, A:H.40
ZN.4: 3 residues within 4Å:- Chain A: H.426
- Chain C: H.476, H.480
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain A- Metal complexes: C:H.476, C:H.480, A:H.426
ZN.5: 2 residues within 4Å:- Chain A: K.138, H.204
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:H.204
ZN.8: 4 residues within 4Å:- Chain A: E.378, E.475
- Chain B: E.378, E.475
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Metal complexes: A:E.378, B:E.378
ZN.9: 5 residues within 4Å:- Chain A: H.479
- Chain B: E.380
- Chain C: H.479
- Chain D: E.380
- Ligands: ZN.28
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Metal complexes: A:H.479, C:H.479
ZN.10: 3 residues within 4Å:- Chain A: E.4
- Chain B: N.19, H.480
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Metal complexes: B:H.480, A:E.4, A:E.4
ZN.11: 3 residues within 4Å:- Chain A: D.56
- Chain B: H.476, H.478
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Metal complexes: A:D.56, A:D.56, B:H.476, B:H.478
ZN.12: 5 residues within 4Å:- Chain B: M.1, E.39, H.477, H.478, H.479
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:E.39, B:H.477, B:H.479
ZN.13: 3 residues within 4Å:- Chain A: K.47
- Chain B: H.476, H.477
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:H.476
ZN.14: 3 residues within 4Å:- Chain B: E.427
- Chain C: H.477, H.478
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain C- Metal complexes: B:E.427, B:E.427, C:H.477, C:H.478
ZN.15: 6 residues within 4Å:- Chain A: E.427
- Chain B: H.426, E.427
- Chain C: H.476, H.477, H.478
5 PLIP interactions:2 interactions with chain B, 1 interactions with chain C, 2 interactions with chain A- Metal complexes: B:H.426, B:E.427, C:H.476, A:E.427, A:E.427
ZN.16: 5 residues within 4Å:- Chain A: M.1
- Chain B: Y.18, H.40, H.478, H.480
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:H.40, B:H.478, B:H.480
ZN.17: 2 residues within 4Å:- Chain B: K.138, H.204
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:H.204
ZN.22: 1 residues within 4Å:- Chain C: H.40
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:H.40, C:H.40
ZN.23: 3 residues within 4Å:- Chain A: H.476, H.480
- Chain C: H.426
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain C- Metal complexes: A:H.476, A:H.480, C:H.426
ZN.24: 2 residues within 4Å:- Chain C: K.138, H.204
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:H.204
ZN.27: 4 residues within 4Å:- Chain C: E.378, E.475
- Chain D: E.378, E.475
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- Metal complexes: C:E.378, D:E.378
ZN.28: 5 residues within 4Å:- Chain A: H.479
- Chain B: E.380
- Chain C: H.479
- Chain D: E.380
- Ligands: ZN.9
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Metal complexes: A:H.479, C:H.479
ZN.29: 3 residues within 4Å:- Chain C: E.4
- Chain D: N.19, H.480
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain D- Metal complexes: C:E.4, C:E.4, D:H.480
ZN.30: 3 residues within 4Å:- Chain C: D.56
- Chain D: H.476, H.478
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain C- Metal complexes: D:H.476, D:H.478, C:D.56, C:D.56
ZN.31: 5 residues within 4Å:- Chain D: M.1, E.39, H.477, H.478, H.479
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:E.39, D:H.477, D:H.479
ZN.32: 3 residues within 4Å:- Chain C: K.47
- Chain D: H.476, H.477
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:H.476
ZN.33: 3 residues within 4Å:- Chain A: H.477, H.478
- Chain D: E.427
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain D- Metal complexes: A:H.477, A:H.478, D:E.427, D:E.427
ZN.34: 6 residues within 4Å:- Chain A: H.476, H.477, H.478
- Chain C: E.427
- Chain D: H.426, E.427
5 PLIP interactions:2 interactions with chain C, 1 interactions with chain A, 2 interactions with chain D- Metal complexes: C:E.427, C:E.427, A:H.476, D:H.426, D:E.427
ZN.35: 5 residues within 4Å:- Chain C: M.1
- Chain D: Y.18, H.40, H.478, H.480
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:H.40, D:H.478, D:H.480
ZN.36: 2 residues within 4Å:- Chain D: K.138, H.204
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:H.204
- 8 x CA: CALCIUM ION(Non-covalent)
CA.6: 3 residues within 4Å:- Chain A: V.182, D.185, Q.366
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:V.182, A:D.185, A:D.185
CA.7: 3 residues within 4Å:- Chain A: S.234, K.296, D.297
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:K.296, A:D.297
CA.18: 3 residues within 4Å:- Chain B: V.182, D.185, Q.366
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:V.182, B:D.185, B:D.185
CA.19: 3 residues within 4Å:- Chain B: S.234, K.296, D.297
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:S.234, B:K.296, B:D.297
CA.25: 3 residues within 4Å:- Chain C: V.182, D.185, Q.366
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:V.182, C:D.185, C:D.185
CA.26: 3 residues within 4Å:- Chain C: S.234, K.296, D.297
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:K.296, C:D.297
CA.37: 3 residues within 4Å:- Chain D: V.182, D.185, Q.366
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:V.182, D:D.185, D:D.185
CA.38: 3 residues within 4Å:- Chain D: S.234, K.296, D.297
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:S.234, D:K.296, D:D.297
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Monne, M. et al., Crystal structure of the ZP-N domain of ZP3 reveals the core fold of animal egg coats. Nature (2008)
- Release Date
- 2008-12-02
- Peptides
- Maltose-binding periplasmic protein, LINKER, Zona pellucida protein 3: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)
- 26 x ZN: ZINC ION(Non-covalent)
- 8 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Monne, M. et al., Crystal structure of the ZP-N domain of ZP3 reveals the core fold of animal egg coats. Nature (2008)
- Release Date
- 2008-12-02
- Peptides
- Maltose-binding periplasmic protein, LINKER, Zona pellucida protein 3: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B