SMTL ID : 3ehh.1

Crystal structure of DesKC-H188V in complex with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: E.137, N.141, V.142, H.145, S.146, D.168, T.171, F.172, K.173, G.174, G.184, L.185, T.207 Ligands: CA.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.141, A:D.168, A:K.173, A:G.184, A:L.185 Water bridges: A:V.142, A:V.142, A:D.168, A:T.207, A:T.207 Salt bridges: A:H.145 pi-Cation interactions: A:H.145 ADP.3: 15 residues within 4Å: Chain B: E.137, N.141, V.142, H.145, S.146, D.168, T.171, F.172, K.173, G.174, H.183, G.184, L.185, T.207 Ligands: CA.4 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:E.137, B:N.141, B:D.168, B:K.173, B:G.184, B:L.185, B:T.207 Salt bridges: B:H.145, B:H.183 pi-Stacking: B:H.145

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: E.137, N.141 Ligands: ADP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.137, H2O.1, H2O.1 CA.4: 3 residues within 4Å: Chain B: E.137, N.141 Ligands: ADP.3 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.137, H2O.3, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Albanesi, D. et al., Structural plasticity and catalysis regulation of a thermosensor histidine kinase. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-09-15

Peptides

Sensor kinase (YocF protein): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Sensor kinase (YocF protein)

Related Entries With Identical Sequence