SMTL ID : 3eki.1

Structural insights of the Mycoplasma hyorhinis protein Mh-p37: A putative thiamine pyrophosphate transporter

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)

TPP.1: 17 residues within 4Å: Chain A: A.126, K.129, N.200, V.201, Y.215, S.255, S.256, S.257, K.258, E.308, W.314, Y.343, D.344, P.377, L.378, L.379, G.380 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:V.201, A:Y.215, A:Y.215, A:E.308, A:Y.343 Hydrogen bonds: A:S.256, A:S.256, A:S.257, A:S.257, A:S.257 Water bridges: A:K.129, A:Y.215, A:Y.215, A:K.258, A:K.258, A:L.378, A:L.378 Salt bridges: A:K.129, A:K.129, A:K.258, A:K.258 pi-Stacking: A:W.314, A:W.314

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: D.237, K.238, D.239, K.273 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.273

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: D.43, S.45, P.118, D.121 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.45, A:P.118, A:D.121, H2O.1, H2O.3 CA.4: 4 residues within 4Å: Chain A: T.326, K.327, A.328, E.330 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.326, A:K.327, A:E.330, H2O.6, H2O.6

7 x BR: BROMIDE ION(Non-covalent)

BR.5: 3 residues within 4Å: Chain A: T.191, D.192, E.193 Ligand excluded by PLIP BR.6: 2 residues within 4Å: Chain A: K.78, N.81 Ligand excluded by PLIP BR.7: 4 residues within 4Å: Chain A: S.292, D.294, S.311, F.324 Ligand excluded by PLIP BR.8: 3 residues within 4Å: Chain A: N.81, K.82, N.85 Ligand excluded by PLIP BR.9: 5 residues within 4Å: Chain A: H.250, R.281, Y.288, K.289, Q.290 Ligand excluded by PLIP BR.10: 4 residues within 4Å: Chain A: G.251, K.252, S.255, K.258 Ligand excluded by PLIP BR.11: 1 residues within 4Å: Chain A: N.87 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sippel, K.H. et al., Structural insights into the extracytoplasmic thiamine-binding lipoprotein p37 of Mycoplasma hyorhinis. J.Bacteriol. (2009)

Release Date

2009-06-23

Peptides

High affinity transport system protein p37: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

High affinity transport system protein p37

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