SMTL ID : 3ekm.6 (6 other biounits)

Crystal structure of diaminopimelate epimerase form arabidopsis thaliana in complex with irreversible inhibitor DL-AziDAP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ZDR: (2R,6S)-2,6-DIAMINO-2-METHYLHEPTANEDIOIC ACID(Covalent)

ZDR.1: 16 residues within 4Å: Chain A: N.37, F.39, N.90, P.96, M.98, C.99, G.100, N.101, N.188, N.227, E.245, R.246, A.253, C.254, G.255, T.256 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:P.96 Hydrogen bonds: A:N.37, A:N.90, A:N.90, A:G.100, A:N.101, A:N.188, A:N.227, A:E.245, A:G.255, A:T.256, A:T.256 Water bridges: A:N.37 Salt bridges: A:R.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pillai, B. et al., Crystal structure of diaminopimelate epimerase from Arabidopsis thaliana, an amino acid racemase critical for L-lysine biosynthesis. J.Mol.Biol. (2009)

Release Date

2009-02-17

Peptides

Diaminopimelate epimerase, chloroplastic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Diaminopimelate epimerase, chloroplastic

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