SMTL ID : 3els.1 (1 other biounit)

Crystal Structure of Yeast Pml1p, Residues 51-204

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: D.82 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.82, H2O.1, H2O.1

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.130 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: M.31, Y.32, E.33, R.49, D.51, N.53, V.158 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.32, A:R.49, A:D.51, A:N.53, A:N.53 GOL.4: 6 residues within 4Å: Chain A: D.16, R.29, M.31, D.51, N.53 Ligands: GOL.5 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.16, A:R.29, A:D.51, A:N.53 Water bridges: A:D.16, A:D.16, A:R.29, A:D.51 GOL.5: 4 residues within 4Å: Chain A: D.16, D.20, R.29 Ligands: GOL.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.29, A:R.29 Water bridges: A:D.16, A:D.20, A:R.29 GOL.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trowitzsch, S. et al., Crystal structure of the Pml1p subunit of the yeast precursor mRNA retention and splicing complex. J.Mol.Biol. (2009)

Release Date

2009-02-10

Peptides

Pre-mRNA leakage protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pre-mRNA leakage protein 1

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