SMTL ID : 3elw.1

Wesselsbron virus Methyltransferase in complex with AdoMet and GpppG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.238, H.239, N.242, R.246 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.242 Salt bridges: A:H.239, A:R.246 SO4.2: 6 residues within 4Å: Chain A: R.45, R.49, S.64, R.65, R.92 Ligands: GP3.7 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.65 Water bridges: A:R.92 Salt bridges: A:R.45, A:R.49, A:R.92 SO4.3: 5 residues within 4Å: Chain A: Y.97, H.123, W.129, V.132, F.134 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.97, A:W.129 Water bridges: A:F.134 Salt bridges: A:H.123 SO4.4: 1 residues within 4Å: Chain A: R.168 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.168 SO4.5: 3 residues within 4Å: Chain A: K.69, R.221 Ligands: GP3.7 6 PLIP interactions: 6 interactions with chain A Water bridges: A:G.66, A:R.221, A:R.221, A:E.226 Salt bridges: A:K.69, A:R.221

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.6: 18 residues within 4Å: Chain A: S.64, G.66, A.67, G.89, C.90, G.91, G.93, G.94, W.95, T.112, L.113, H.118, S.138, N.139, V.140, F.141, D.154, I.155 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:S.64, A:C.90, A:G.93, A:G.94, A:W.95, A:T.112, A:L.113, A:H.118, A:N.139, A:V.140, A:D.154 Water bridges: A:G.66, A:D.87, A:D.87, A:G.89, A:R.92, A:E.119, A:E.119, A:N.139 Salt bridges: A:D.154

1 x GP3: DIGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GP3.7: 15 residues within 4Å: Chain A: K.21, L.24, N.25, L.27, F.32, K.36, E.42, R.65, S.158, S.159, S.160, R.221, S.223 Ligands: SO4.2, SO4.5 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:K.21, A:K.21, A:L.27, A:L.27, A:L.27, A:R.221, A:S.223 Water bridges: A:N.25, A:N.25, A:S.160, A:R.221, A:R.221 Salt bridges: A:K.36, A:K.36, A:R.221, A:R.221, A:R.221 pi-Stacking: A:F.32, A:F.32 pi-Cation interactions: A:F.32, A:R.49, A:R.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bollati, M. et al., Recognition of RNA Cap in the Wesselsbron Virus NS5 Methyltransferase Domain: Implications for RNA-Capping Mechanisms in Flavivirus. J.Mol.Biol. (2009)

Release Date

2008-11-18

Peptides

Methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methyltransferase

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