SMTL ID : 3ely.1

Wesselsbron virus Methyltransferase in complex with AdoHcy

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.45, R.49, R.65, R.92 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.65 Salt bridges: A:R.45, A:R.49, A:R.92 SO4.2: 3 residues within 4Å: Chain A: G.66, K.69, D.154 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.66, A:D.154 Salt bridges: A:K.69 SO4.3: 5 residues within 4Å: Chain A: Y.97, H.123, M.124, W.129, V.132 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.97, A:W.129 Salt bridges: A:H.123 SO4.4: 7 residues within 4Å: Chain A: L.52, G.55, R.56, T.57, I.122, H.123, M.124 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.55 SO4.5: 2 residues within 4Å: Chain A: N.25, L.27 No protein-ligand interaction detected (PLIP)

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.6: 20 residues within 4Å: Chain A: S.64, G.66, A.67, G.89, C.90, G.91, G.93, G.94, W.95, T.112, L.113, H.118, E.119, S.138, N.139, V.140, F.141, D.154, I.155 Ligands: PEG.7 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.64, A:C.90, A:R.92, A:G.93, A:G.94, A:W.95, A:W.95, A:T.112, A:L.113, A:E.119, A:E.119, A:N.139, A:V.140 Water bridges: A:G.114

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 8 residues within 4Å: Chain A: H.118, F.141, I.155, G.156, E.157, R.168, V.172 Ligands: SAH.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.157, A:R.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bollati, M. et al., Recognition of RNA Cap in the Wesselsbron Virus NS5 Methyltransferase Domain: Implications for RNA-Capping Mechanisms in Flavivirus. J.Mol.Biol. (2009)

Release Date

2008-11-18

Peptides

Methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methyltransferase

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