SMTL ID : 3emz.1

Crystal structure of xylanase XynB from Paenibacillus barcinonensis complexed with a conduramine derivative

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x HXH: (1S,2S,3R,6R)-6-[(4-phenoxybenzyl)amino]cyclohex-4-ene-1,2,3-triol(Non-covalent)

HXH.1: 13 residues within 4Å: Chain A: E.43, K.47, H.80, W.84, N.132, E.133, Y.178, Q.209, H.211, E.240, W.290, W.298, F.302 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.178, A:W.298, A:F.302 Hydrogen bonds: A:K.47, A:K.47, A:H.80, A:N.132, A:E.133, A:Q.209, A:Q.209 pi-Stacking: A:F.302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gallardo, O. et al., Structural insights into the specificity of Xyn10B from Paenibacillus barcinonensis and its improved stability by forced protein evolution. J.Biol.Chem. (2010)

Release Date

2009-09-29

Peptides

Endo-1,4-beta-xylanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endo-1,4-beta-xylanase

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