SMTL ID : 3eo4.1 (1 other biounit)

The crystal structure of a domain from Methanocaldococcus jannaschii DSM 2661

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-dimer

Ligands

4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 10 residues within 4Å: Chain A: F.39, I.95, I.97, W.103, G.104, G.108, N.135, R.137, L.141 Ligands: MES.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.104, A:I.107, A:G.108, A:N.135 Water bridges: A:K.105, A:K.105, A:H.106, A:R.109, A:R.137, A:L.141 MES.2: 12 residues within 4Å: Chain A: R.31, F.40, N.82, G.94, I.95, L.96, R.130, I.131, N.135, S.138, F.142 Ligands: MES.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.82, A:I.95, A:N.135, A:S.138 Salt bridges: A:R.31 MES.4: 10 residues within 4Å: Chain B: F.39, I.95, W.103, G.104, G.108, N.135, R.137, S.138, L.141 Ligands: MES.5 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.104, B:G.108, B:N.135, B:R.137 Water bridges: B:H.106 MES.5: 12 residues within 4Å: Chain B: R.31, F.40, N.82, I.93, G.94, I.95, L.96, R.130, N.135, S.138, F.142 Ligands: MES.4 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.82, B:N.82, B:I.95, B:N.135, B:S.138 Water bridges: B:R.62 Salt bridges: B:R.31

1 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)

PG6.3: 7 residues within 4Å: Chain A: N.61, L.86, N.87, T.88, I.122, G.123, Y.124 No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 2 residues within 4Å: Chain B: I.122, Y.124 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a domain from Methanocaldococcus jannaschii DSM 2661. To be Published

Release Date

2008-10-14

Peptides

Uncharacterized protein MJ1062: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein MJ1062

Related Entries With Identical Sequence