SMTL ID : 3epy.1 (1 other biounit)

Crystal Structure of human acyl-CoA binding domain 7 complexed with palmitoyl-Coa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

homo-tetramer

Ligands

4 x COA: COENZYME A(Non-covalent)

COA.1: 10 residues within 4Å: Chain A: A.12, V.15, R.16, L.30, Y.31, Y.34, K.35 Chain B: K.57, Y.76 Ligands: PLM.2 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.16, A:Y.31, B:Y.76 Water bridges: A:R.16 Salt bridges: A:K.35, B:K.57, B:K.57 pi-Stacking: A:Y.34, A:Y.34 COA.3: 10 residues within 4Å: Chain A: K.57, Y.76 Chain B: A.12, V.15, R.16, L.30, Y.31, Y.34, K.35 Ligands: PLM.4 12 PLIP interactions: 6 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:R.16, B:Y.31, A:Y.76, A:Y.76 Water bridges: B:K.35, A:K.57, A:K.57 Salt bridges: B:K.35, A:K.57, A:K.57 pi-Stacking: B:Y.34, B:Y.34 COA.5: 10 residues within 4Å: Chain C: A.12, V.15, R.16, L.30, Y.31, Y.34, K.35 Chain D: K.57, Y.76 Ligands: PLM.6 9 PLIP interactions: 5 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:R.16, D:Y.76, D:Y.76 Water bridges: C:R.16 Salt bridges: C:K.35, D:K.57, D:K.57 pi-Stacking: C:Y.34, C:Y.34 COA.7: 10 residues within 4Å: Chain C: K.57, Y.76 Chain D: A.12, V.15, R.16, L.30, Y.31, Y.34, K.35 Ligands: PLM.8 12 PLIP interactions: 7 interactions with chain D, 5 interactions with chain C Hydrogen bonds: D:R.16, D:Y.31, D:Y.31, C:Y.76 Water bridges: D:K.35, C:K.57, C:K.57 Salt bridges: D:K.35, C:K.57, C:K.57 pi-Stacking: D:Y.34, D:Y.34

4 x PLM: PALMITIC ACID(Non-covalent)

PLM.2: 6 residues within 4Å: Chain A: V.15, R.16, L.18, L.30 Chain B: K.57 Ligands: COA.1 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.15, A:L.18, A:L.18, A:L.30, B:K.57 PLM.4: 11 residues within 4Å: Chain A: K.57 Chain B: V.15, L.18, K.19, A.20, R.21, P.22, L.27, L.30, Y.31 Ligands: COA.3 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.15, B:L.27, B:L.30 PLM.6: 6 residues within 4Å: Chain C: V.15, R.16, L.18, L.30 Chain D: K.57 Ligands: COA.5 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:V.15, C:L.18, C:L.18, C:L.30, D:K.57 PLM.8: 11 residues within 4Å: Chain C: K.57 Chain D: V.15, L.18, K.19, A.20, R.21, P.22, L.27, L.30, Y.31 Ligands: COA.7 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:V.15, D:L.27, D:L.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kavanagh, K.L. et al., Crystal Structure of human acyl-CoA binding domain 7 complexed with palmitoyl-Coa. To be Published

Release Date

2009-01-20

Peptides

Acyl-CoA-binding domain-containing protein 7: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Acyl-CoA-binding domain-containing protein 7

Related Entries With Identical Sequence