- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
FAD.3: 28 residues within 4Å:- Chain A: E.45, G.46, G.47
- Chain B: K.33, L.34, V.35, V.36, G.37, N.38, T.39, E.40, I.41, L.64, A.78, F.114, A.115, V.119, V.122, A.123, S.124, G.127, N.128, I.130, T.131, S.136, D.137, I.180, L.181
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:A.115, B:V.119
- Hydrogen bonds: B:L.34, B:L.34, B:V.36, B:G.37, B:N.38, B:T.39, B:E.40, B:I.41, B:A.115, B:S.124, B:T.131, B:D.137, B:D.137, B:D.137, B:L.181, B:L.181
- pi-Stacking: B:F.114
- pi-Cation interactions: B:R.203
FAD.9: 26 residues within 4Å:- Chain D: E.45, G.46
- Chain E: K.33, L.34, V.35, V.36, G.37, N.38, T.39, E.40, I.41, A.78, L.82, F.114, A.115, V.119, A.123, S.124, G.127, N.128, I.130, T.131, S.136, D.137, I.180, L.181
19 PLIP interactions:19 interactions with chain E- Hydrophobic interactions: E:A.115, E:V.119, E:V.119
- Hydrogen bonds: E:L.34, E:L.34, E:V.36, E:G.37, E:N.38, E:T.39, E:T.39, E:E.40, E:I.41, E:A.115, E:S.124, E:D.137, E:D.137, E:L.181, E:L.181
- pi-Stacking: E:F.114
- 2 x MTE: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER(Non-covalent)
MTE.4: 20 residues within 4Å:- Chain A: Q.112, C.150
- Chain C: G.226, G.227, F.228, G.229, R.342, M.468, G.469, Q.470, A.508, A.509, S.510, V.511, S.512, T.513, Q.624, G.690, E.691
- Ligands: MOM.5
9 PLIP interactions:1 interactions with chain A, 8 interactions with chain C- Hydrogen bonds: A:Q.112, C:G.227, C:F.228, C:M.468, C:Q.470, C:S.510, C:S.512, C:Q.624, C:Q.624
MTE.10: 20 residues within 4Å:- Chain D: Q.112, C.150
- Chain F: G.226, G.227, F.228, G.229, R.342, M.468, G.469, Q.470, A.508, A.509, S.510, V.511, S.512, T.513, Q.624, G.690, E.691
- Ligands: MOM.11
10 PLIP interactions:9 interactions with chain F, 1 interactions with chain D- Hydrogen bonds: F:G.227, F:F.228, F:M.468, F:Q.470, F:S.512, F:T.513, F:T.513, F:Q.624, F:Q.624, D:Q.112
- 2 x MOM: HYDROXY(DIOXO)MOLYBDENUM(Non-covalent)
MOM.5: 12 residues within 4Å:- Chain C: Q.197, F.228, G.229, E.232, A.340, F.341, R.342, A.508, A.509, E.691
- Ligands: MTE.4, XAN.6
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Q.197, C:A.509, C:E.691
MOM.11: 13 residues within 4Å:- Chain F: Q.197, F.228, G.229, E.232, A.340, F.341, R.342, T.507, A.508, A.509, E.691
- Ligands: MTE.10, XAN.12
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:Q.197, F:E.232, F:E.232, F:A.509
- 2 x XAN: XANTHINE(Non-covalent)
XAN.6: 12 residues within 4Å:- Chain C: E.232, S.306, R.310, F.344, S.438, F.439, T.440, V.441, L.444, A.508, A.509
- Ligands: MOM.5
10 PLIP interactions:10 interactions with chain C- Hydrogen bonds: C:E.232, C:E.232, C:S.306, C:R.310, C:T.440, C:T.440
- pi-Stacking: C:F.344, C:F.344, C:F.439, C:F.439
XAN.12: 11 residues within 4Å:- Chain F: E.232, S.306, R.310, F.344, S.438, F.439, T.440, L.444, A.508, A.509
- Ligands: MOM.11
10 PLIP interactions:10 interactions with chain F- Hydrogen bonds: F:E.232, F:E.232, F:S.306, F:R.310, F:T.440, F:T.440
- pi-Stacking: F:F.344, F:F.344, F:F.439, F:F.439
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pauff, J.M. et al., Substrate Orientation and Catalysis at the Molybdenum Site in Xanthine Oxidase: CRYSTAL STRUCTURES IN COMPLEX WITH XANTHINE AND LUMAZINE. J.Biol.Chem. (2009)
- Release Date
- 2009-01-27
- Peptides
- Xanthine dehydrogenase/oxidase: AD
Xanthine dehydrogenase/oxidase: BE
Xanthine dehydrogenase/oxidase: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
JB
BE
KC
CF
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x MTE: PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER(Non-covalent)
- 2 x MOM: HYDROXY(DIOXO)MOLYBDENUM(Non-covalent)
- 2 x XAN: XANTHINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pauff, J.M. et al., Substrate Orientation and Catalysis at the Molybdenum Site in Xanthine Oxidase: CRYSTAL STRUCTURES IN COMPLEX WITH XANTHINE AND LUMAZINE. J.Biol.Chem. (2009)
- Release Date
- 2009-01-27
- Peptides
- Xanthine dehydrogenase/oxidase: AD
Xanthine dehydrogenase/oxidase: BE
Xanthine dehydrogenase/oxidase: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
JB
BE
KC
CF
L