SMTL ID : 3ewa.1

RADA recombinase from METHANOCOCCUS MARIPALUDIS in complex with AMPPNP and ammonium ions

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 15 residues within 4Å: Chain A: M.106, F.107, G.108, S.109, G.110, K.111, T.112, Q.113, E.151, R.158, Q.161, I.315, T.316, E.317 Ligands: MG.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.108, A:S.109, A:G.110, A:K.111, A:K.111, A:K.111, A:K.111, A:T.112, A:T.112, A:Q.113, A:Q.113, A:Q.161, A:Q.161 Water bridges: A:T.112, A:Q.257

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.112 Ligands: ANP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.112, H2O.1, H2O.1, H2O.1 MG.3: 3 residues within 4Å: Chain A: Q.98, S.99, D.246 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:Q.98, A:D.246, H2O.1, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Conservation of a conformational switch in RadA recombinase from Methanococcus maripaludis. Acta Crystallogr.,Sect.D (2009)

Release Date

2009-05-05

Peptides

DNA repair and recombination protein radA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA repair and recombination protein radA

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