SMTL ID : 3f06.1 (1 other biounit)

Crystal Structure Analysis of Human HDAC8 D101A Variant.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.178, H.180, D.267 Ligands: B3N.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.178, A:H.180, A:D.267

2 x K: POTASSIUM ION(Non-covalent)

K.2: 6 residues within 4Å: Chain A: D.176, D.178, H.180, S.199, L.200, H.201 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.176, A:D.178, A:H.180, A:S.199, A:L.200 K.3: 5 residues within 4Å: Chain A: F.189, T.192, V.195, Y.225, S.226 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:F.189, A:T.192, A:V.195, A:Y.225

1 x B3N: 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide(Non-covalent)

B3N.4: 13 residues within 4Å: Chain A: Y.100, H.142, H.143, G.151, F.152, D.178, H.180, F.208, D.267, G.304, Y.306 Ligands: ZN.1, BME.5 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.100, A:F.152, A:F.208 Hydrogen bonds: A:H.143, A:H.180 pi-Cation interactions: A:K.33

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.5: 5 residues within 4Å: Chain A: W.141, G.303, G.304, Y.306 Ligands: B3N.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dowling, D.P. et al., Structural studies of human histone deacetylase 8 and its site-specific variants complexed with substrate and inhibitors. Biochemistry (2008)

Release Date

2008-12-30

Peptides

Histone deacetylase 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone deacetylase 8

Related Entries With Identical Sequence