SMTL ID : 3f10.1

Crystal structure of Clostridium Acetobutylicum 8-oxoguanine DNA glycosylase in complex with 8-oxoguanosine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x 8HG: 2'-DEOXY-8-OXOGUANOSINE(Non-covalent)

8HG.1: 14 residues within 4Å: Chain A: G.30, F.33, F.122, S.125, I.130, Q.222, F.230, P.239, D.241, V.244, Q.278, Q.279, F.282, R.286 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.30, A:S.125, A:N.127, A:D.241, A:Q.278, A:Q.278, A:Q.278, A:Q.279, A:R.286 Water bridges: A:R.286, A:R.286 Salt bridges: A:D.241 pi-Stacking: A:F.282

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: F.48, V.74, Y.78, R.112 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.74 Water bridges: A:R.112, A:Q.233 EDO.3: 3 residues within 4Å: Chain A: R.112, Q.233, Y.235 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.112 Water bridges: A:Q.233, A:Y.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faucher, F. et al., Structural characterization of Clostridium acetobutylicum 8-oxoguanine DNA glycosylase in its apo form and in complex with 8-oxodeoxyguanosine. J.Mol.Biol. (2009)

Release Date

2009-04-07

Peptides

8-oxoguanine-DNA-glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

8-oxoguanine-DNA-glycosylase