SMTL ID : 3f2l.1

Crystal structure analysis of the K171A mutation of N-terminal type II cohesin 1 from the cellulosomal ScaB subunit of Acetivibrio cellulolyticus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: V.51, G.55, V.56, A.57 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.57 Water bridges: A:K.119 EDO.2: 6 residues within 4Å: Chain A: D.73, F.74, S.97, D.100 Ligands: NH4.14, NH4.15 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.97, A:D.100 Water bridges: A:D.73 EDO.3: 1 residues within 4Å: Chain A: N.71 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.71 EDO.4: 5 residues within 4Å: Chain A: I.140, D.141, Y.157, S.158, V.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.159, A:V.159 EDO.5: 5 residues within 4Å: Chain A: S.72, F.74, Y.101, A.106, E.108 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.108, A:E.108 Water bridges: A:A.106, A:A.106 EDO.6: 3 residues within 4Å: Chain A: N.30, Q.109, T.110 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.109, A:T.110 EDO.7: 6 residues within 4Å: Chain A: I.21, V.51, T.52, S.53, G.55, K.117 No protein-ligand interaction detected (PLIP) EDO.8: 6 residues within 4Å: Chain A: S.5, I.31, T.32, I.153, S.155, G.156 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.5, A:T.32 EDO.9: 1 residues within 4Å: Chain A: K.122 No protein-ligand interaction detected (PLIP) EDO.10: 1 residues within 4Å: Chain A: T.4 No protein-ligand interaction detected (PLIP) EDO.19: 3 residues within 4Å: Chain A: S.53, G.65, A.66 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.53, A:A.66 Water bridges: A:S.53

8 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.11: 4 residues within 4Å: Chain A: L.11, K.13, T.14, V.164 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.164 NH4.12: 4 residues within 4Å: Chain A: T.68, N.71, E.108 Ligands: NH4.13 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.68, A:N.71 NH4.13: 7 residues within 4Å: Chain A: I.69, L.70, N.71, S.72, Y.95, E.108 Ligands: NH4.12 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.71, A:S.72, A:S.72 NH4.14: 4 residues within 4Å: Chain A: D.73, N.75 Ligands: EDO.2, NH4.15 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.73, A:N.75 NH4.15: 6 residues within 4Å: Chain A: D.73, F.74, N.75, S.97 Ligands: EDO.2, NH4.14 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.73, A:S.97 NH4.16: 6 residues within 4Å: Chain A: T.52, Y.58, T.62, M.63, P.64, G.65 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.64 NH4.17: 5 residues within 4Å: Chain A: N.27, I.28, T.110, G.111 Ligands: NH4.18 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.28, A:G.111 NH4.18: 3 residues within 4Å: Chain A: G.111, T.112 Ligands: NH4.17 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.112, A:T.112

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.20: 3 residues within 4Å: Chain A: T.59, K.60, S.61 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.59, A:S.61 Water bridges: A:K.60, A:K.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frolow, F. et al., Crystal structure analysis of the K171A mutation of N-terminal type II cohesin 1 from the cellulosomal ScaB subunit of Acetivibrio cellulolyticus. To be Published

Release Date

2008-12-02

Peptides

Cellulosomal scaffoldin adaptor protein B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cellulosomal scaffoldin adaptor protein B