SMTL ID : 3f4a.1

Structure of Ygr203w, a yeast protein tyrosine phosphatase of the Rhodanese family

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: C.111, M.112, L.113, S.114, Q.115, Q.116, R.117 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.113, A:Q.115, A:Q.116, A:R.117 Salt bridges: A:R.117 SO4.2: 4 residues within 4Å: Chain A: G.61, S.62, S.78, R.117 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.61, A:S.62 Water bridges: A:S.78, A:S.78, A:S.78 Salt bridges: A:R.117 SO4.3: 1 residues within 4Å: Chain A: R.138 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.138, A:R.138 Salt bridges: A:R.138 SO4.4: 5 residues within 4Å: Chain A: R.40, W.41, T.47, T.48, T.49 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.47, A:T.48, A:T.49, A:T.49 Water bridges: A:T.49, A:T.49 Salt bridges: A:R.40 SO4.6: 4 residues within 4Å: Chain B: W.73, H.74, Y.75, R.93 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.74, B:H.74 Water bridges: B:R.93, B:R.93 Salt bridges: B:R.93 SO4.7: 3 residues within 4Å: Chain B: G.61, S.62, R.117 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.61, B:S.62 Water bridges: B:S.62, B:S.62, B:S.78, B:S.78, B:S.78 Salt bridges: B:R.117 SO4.8: 7 residues within 4Å: Chain B: C.111, M.112, L.113, S.114, Q.115, Q.116, R.117 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.113, B:Q.115, B:Q.116, B:R.117 Salt bridges: B:R.117 SO4.9: 5 residues within 4Å: Chain B: H.68, I.69, K.70, D.71, A.161 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:I.69, B:D.71, B:D.71 Salt bridges: B:H.68

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: W.73, R.93 Ligand excluded by PLIP

1 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.10: 2 residues within 4Å: Chain B: M.123, R.127 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Proudfoot, M. et al., Structure of Ygr203w, a yeast protein tyrosine phosphatase of the Rhodanese family. To be Published

Release Date

2008-11-25

Peptides

Uncharacterized protein YGR203W: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein YGR203W