SMTL ID : 3f4n.2 (4 other biounits)

Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein PdxJ from Yersinia pestis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x PXP: PYRIDOXINE-5'-PHOSPHATE(Non-covalent)

PXP.1: 14 residues within 4Å: Chain A: N.12, D.14, E.75, V.97, F.136, E.156, G.195, H.196, G.197, N.216, I.217, G.218, H.219 Chain B: R.23 15 PLIP interactions: 13 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.97, A:F.136 Hydrogen bonds: A:N.12, A:H.196, A:G.197, A:G.218, A:H.219, B:R.23 Water bridges: A:E.75, A:L.198, A:L.198, A:A.220, A:A.220 Salt bridges: A:H.196, B:R.23 PXP.3: 14 residues within 4Å: Chain A: R.23 Chain B: N.12, D.14, E.75, C.95, V.97, F.136, E.156, H.196, G.197, N.216, I.217, G.218, H.219 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:V.97, B:F.136 Hydrogen bonds: B:N.12, B:D.14, B:H.196, B:G.197, B:G.218, B:H.219 Water bridges: B:H.15, B:L.198, B:L.198, A:R.23 Salt bridges: B:H.196, A:R.23

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: H.15, R.50, R.54, H.55 Chain B: R.23 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Water bridges: A:R.54, B:R.23, B:R.23 Salt bridges: A:H.15, A:R.50, A:R.54, A:H.55, B:R.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Pyridoxal Phosphate Biosynthetic Protein PdxJ from Yersinia pestis. To be Published (2008)

Release Date

2008-11-25

Peptides

Pyridoxine 5'-phosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Pyridoxine 5'-phosphate synthase

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