- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CU1: COPPER (I) ION(Non-covalent)
- 2 x CU: COPPER (II) ION(Non-covalent)
CU.2: 6 residues within 4Å:- Chain A: H.44, H.46, H.61, H.118
- Ligands: CU1.1, PEO.9
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.44, A:H.46, A:H.61, A:H.118
CU.11: 6 residues within 4Å:- Chain B: H.44, H.46, H.61, H.118
- Ligands: CU1.10, PEO.18
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.44, B:H.46, B:H.61, B:H.118
- 2 x ZN: ZINC ION(Non-covalent)
ZN.3: 4 residues within 4Å:- Chain A: H.61, H.69, H.78, D.81
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:H.61, A:H.69, A:H.78, A:D.81, A:D.81
ZN.12: 4 residues within 4Å:- Chain B: H.61, H.69, H.78, D.81
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:H.61, B:H.69, B:H.78, B:D.81, B:D.81
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.4: 5 residues within 4Å:- Chain A: G.88, E.89, D.90, G.91, K.92
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:G.88, A:D.90, A:G.91, A:K.92, A:K.92
NA.13: 5 residues within 4Å:- Chain B: G.88, E.89, D.90, G.91, K.92
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:G.88, B:D.90, B:G.91, B:K.92, B:K.92
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 4 residues within 4Å:- Chain A: N.53, G.54, C.55, T.56
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:C.55, A:T.56
- Water bridges: A:D.11, A:D.11, A:D.11, A:T.56, A:T.56, A:T.56
SO4.6: 2 residues within 4Å:- Chain A: H.129, E.130
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.130
- Water bridges: A:Q.131, A:N.137
- Salt bridges: A:H.129
SO4.7: 4 residues within 4Å:- Chain A: D.74, E.75, N.76, R.126
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.75, A:N.76, A:R.126
- Water bridges: A:D.74, A:D.74
SO4.8: 3 residues within 4Å:- Chain A: E.47, R.113
- Chain B: I.149
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.47
- Water bridges: A:R.113, A:R.113, A:R.113
- Salt bridges: A:R.113
SO4.14: 4 residues within 4Å:- Chain B: N.53, G.54, C.55, T.56
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:C.55, B:T.56, B:T.56
- Water bridges: B:D.11, B:D.11, B:D.11, B:D.11, B:T.56
SO4.15: 2 residues within 4Å:- Chain B: H.129, E.130
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.130
- Water bridges: B:Q.131, B:N.137
- Salt bridges: B:H.129
SO4.16: 4 residues within 4Å:- Chain B: D.74, E.75, N.76, R.126
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:E.75, B:N.76, B:R.126
- Water bridges: B:E.73, B:D.74, B:E.75, B:E.75
SO4.17: 3 residues within 4Å:- Chain A: I.149
- Chain B: E.47, R.113
4 PLIP interactions:4 interactions with chain B- Water bridges: B:R.113, B:R.113, B:R.113
- Salt bridges: B:R.113
- 2 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)
PEO.9: 7 residues within 4Å:- Chain A: H.46, H.61, H.118, T.135, R.141
- Ligands: CU1.1, CU.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.141
- Water bridges: A:T.135, A:T.135
PEO.18: 7 residues within 4Å:- Chain B: H.46, H.61, H.118, T.135, R.141
- Ligands: CU1.10, CU.11
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:H.118, B:R.141
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shin, D.S. et al., Superoxide Dismutase from the Eukaryotic Thermophile Alvinella pompejana: Structures, Stability, Mechanism, and Insights into Amyotrophic Lateral Sclerosis. J.Mol.Biol. (2009)
- Release Date
- 2009-02-10
- Peptides
- Copper,Zinc Superoxide Dismutase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CU1: COPPER (I) ION(Non-covalent)
- 2 x CU: COPPER (II) ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 2 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shin, D.S. et al., Superoxide Dismutase from the Eukaryotic Thermophile Alvinella pompejana: Structures, Stability, Mechanism, and Insights into Amyotrophic Lateral Sclerosis. J.Mol.Biol. (2009)
- Release Date
- 2009-02-10
- Peptides
- Copper,Zinc Superoxide Dismutase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A