SMTL ID : 3f98.1 (2 other biounits)

Crystal structure of human plasma platelet activating factor acetylhydrolase covalently inhibited by tabun

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NTJ: R-ETHYL N,N-DIMETHYLPHOSPHONAMIDATE(Covalent)

NTJ.1: 10 residues within 4Å: Chain A: G.106, L.107, Y.114, H.226, S.227, F.228, W.252, F.276, H.305, Q.306 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.107, A:F.228

31 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 7 residues within 4Å: Chain A: I.52, P.53, N.54, K.55, F.58, R.76, G.80 Ligand excluded by PLIP FMT.3: 5 residues within 4Å: Chain A: Y.289, R.295, K.296, M.297 Ligands: FMT.11 Ligand excluded by PLIP FMT.4: 3 residues within 4Å: Chain A: D.328, I.329, N.369 Ligand excluded by PLIP FMT.5: 4 residues within 4Å: Chain A: F.26, D.27, G.32, Q.185 Ligand excluded by PLIP FMT.6: 2 residues within 4Å: Chain A: R.161, I.171 Ligand excluded by PLIP FMT.7: 5 residues within 4Å: Chain A: A.344, Q.347, K.348, D.357, D.360 Ligand excluded by PLIP FMT.8: 3 residues within 4Å: Chain A: R.136, L.158, Y.159 Ligand excluded by PLIP FMT.9: 4 residues within 4Å: Chain A: E.274, Y.275, R.301, G.302 Ligand excluded by PLIP FMT.10: 5 residues within 4Å: Chain A: N.89, S.90, P.91, F.207, Q.211 Ligand excluded by PLIP FMT.11: 5 residues within 4Å: Chain A: Y.289, K.293, E.294, R.295 Ligands: FMT.3 Ligand excluded by PLIP FMT.12: 3 residues within 4Å: Chain A: Y.17, Q.42, R.93 Ligand excluded by PLIP FMT.13: 1 residues within 4Å: Chain A: N.73 Ligand excluded by PLIP FMT.14: 6 residues within 4Å: Chain A: V.199, K.200, N.201, F.207, D.208, M.209 Ligand excluded by PLIP FMT.15: 5 residues within 4Å: Chain A: D.135, R.136, R.161, Q.175 Ligands: FMT.28 Ligand excluded by PLIP FMT.16: 10 residues within 4Å: Chain A: H.133, R.134, D.135, R.136, S.137, A.138, T.141, L.158, Y.159, L.160 Ligand excluded by PLIP FMT.17: 5 residues within 4Å: Chain A: Y.275, F.276, V.304, H.305, K.324 Ligand excluded by PLIP FMT.18: 2 residues within 4Å: Chain A: K.340, W.359 Ligand excluded by PLIP FMT.19: 3 residues within 4Å: Chain A: W.59, W.157, Y.159 Ligand excluded by PLIP FMT.20: 4 residues within 4Å: Chain A: S.62, K.63, G.66, T.67 Ligand excluded by PLIP FMT.21: 2 residues within 4Å: Chain A: E.364, D.366 Ligand excluded by PLIP FMT.22: 3 residues within 4Å: Chain A: D.194, H.195, D.214 Ligand excluded by PLIP FMT.23: 3 residues within 4Å: Chain A: D.360, C.361, E.364 Ligand excluded by PLIP FMT.24: 2 residues within 4Å: Chain A: R.46, D.48 Ligand excluded by PLIP FMT.25: 2 residues within 4Å: Chain A: H.321, D.328 Ligand excluded by PLIP FMT.26: 3 residues within 4Å: Chain A: N.54, Y.142, K.155 Ligand excluded by PLIP FMT.27: 5 residues within 4Å: Chain A: P.16, Y.17, H.124, K.354, F.356 Ligand excluded by PLIP FMT.28: 4 residues within 4Å: Chain A: E.174, Q.175, Q.178 Ligands: FMT.15 Ligand excluded by PLIP FMT.29: 5 residues within 4Å: Chain A: R.161, T.162, L.163, E.168, R.172 Ligand excluded by PLIP FMT.30: 6 residues within 4Å: Chain A: K.9, I.10, P.11, F.313, N.332 Ligands: FMT.31 Ligand excluded by PLIP FMT.31: 3 residues within 4Å: Chain A: T.8, K.9 Ligands: FMT.30 Ligand excluded by PLIP FMT.32: 4 residues within 4Å: Chain A: E.219, R.244, H.349, L.350 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Samanta, U. et al., Crystal structures of human group-VIIA phospholipase A2 inhibited by organophosphorus nerve agents exhibit non-aged complexes. Biochem Pharmacol (2009)

Release Date

2009-06-23

Peptides

Platelet-activating factor acetylhydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Platelet-activating factor acetylhydrolase

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