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SMTL ID : 3fb0.1

Metal exchange in thermolysin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1:	6 residues within 4Å: Chain A: D.138, E.177, D.185, E.187, E.190 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.138, A:E.177, A:E.177, A:D.185, A:E.190
CA.2:	5 residues within 4Å: Chain A: E.177, N.183, D.185, E.190 Ligands: CA.1 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.177, A:N.183, A:D.185, A:E.190, H₂O.5, H₂O.5
CA.3:	3 residues within 4Å: Chain A: D.57, D.59, Q.61 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.57, A:D.59, A:Q.61, H₂O.5, H₂O.9
CA.4:	4 residues within 4Å: Chain A: Y.193, T.194, I.197, D.200 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.193, A:I.197, A:D.200, H₂O.9, H₂O.9

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5:

1 residues within 4Å:

Chain A: Y.66

2 PLIP interactions:

2 interactions with chain A

Water bridges: A:Y.46
pi-Cation interactions: A:Y.66

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Englert, L. et al., Metal exchange in thermolysin. To be Published

Release Date

2009-12-08

Peptides

Thermolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

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3D Viewer
NGLPV2D

Thermolysin

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1kei.1 | 1kjo.1 | 1kjp.1 | 1kkk.1 | 1kl6.1 | 1kr6.1 | 1kro.1 | 1ks7.1 | 1kto.1 | 1y3g.1 | 2whz.1 | 2wi0.1 | 3dnz.1 | 3do0.1 | 3do1.1 | 3do2.1 | 3fbo.1 | 3fgd.1 | 3flf.1 | 3fv4.1 | 3fvp.1 | 3fxp.1 | 3fxs.1 | 3ls7.1 | 3ms3.1 | 3msa.1 | 3msf.1 | 3msn.1 | 3n21.1 | 3nn7.1 more...less...

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