SMTL ID : 3fbv.1 (7 other biounits)

Crystal structure of the oligomer formed by the kinase-ribonuclease domain of Ire1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-14-mer

Ligands

14 x APJ: N~2~-1H-benzimidazol-5-yl-N~4~-(3-cyclopropyl-1H-pyrazol-5-yl)pyrimidine-2,4-diamine(Non-covalent)

APJ.1: 16 residues within 4Å: Chain A: L.41, G.42, Y.43, A.61, K.63, L.106, E.107, L.108, C.109, L.111, N.112, D.115, Q.162, L.165, S.188, D.189 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.106, A:L.165 Hydrogen bonds: A:C.109, A:C.109, A:C.109, A:N.112, A:S.188, A:D.189 APJ.2: 16 residues within 4Å: Chain B: L.41, G.42, Y.43, A.61, K.63, L.106, E.107, L.108, C.109, L.111, N.112, D.115, Q.162, L.165, S.188, D.189 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.106, B:L.165 Hydrogen bonds: B:C.109, B:C.109, B:C.109, B:N.112, B:S.188, B:D.189 APJ.3: 17 residues within 4Å: Chain C: L.41, G.42, Y.43, V.50, A.61, K.63, L.106, E.107, L.108, C.109, L.111, N.112, D.115, Q.162, L.165, S.188, D.189 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:V.50, C:L.106, C:L.165 Hydrogen bonds: C:C.109, C:C.109, C:C.109, C:N.112, C:S.188, C:D.189 APJ.4: 17 residues within 4Å: Chain D: L.41, G.42, Y.43, V.50, A.61, K.63, L.106, E.107, L.108, C.109, L.111, N.112, D.115, Q.162, L.165, S.188, D.189 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:V.50, D:L.106, D:L.165 Hydrogen bonds: D:C.109, D:C.109, D:C.109, D:N.112, D:S.188, D:D.189 APJ.5: 16 residues within 4Å: Chain E: L.41, G.42, Y.43, A.61, K.63, L.106, E.107, L.108, C.109, L.111, N.112, D.115, Q.162, L.165, S.188, D.189 8 PLIP interactions: 8 interactions with chain E Hydrophobic interactions: E:L.106, E:L.165 Hydrogen bonds: E:C.109, E:C.109, E:C.109, E:N.112, E:S.188, E:D.189 APJ.6: 16 residues within 4Å: Chain F: L.41, G.42, Y.43, A.61, K.63, L.106, E.107, L.108, C.109, L.111, N.112, D.115, Q.162, L.165, S.188, D.189 8 PLIP interactions: 8 interactions with chain F Hydrophobic interactions: F:L.106, F:L.165 Hydrogen bonds: F:C.109, F:C.109, F:C.109, F:N.112, F:S.188, F:D.189 APJ.7: 17 residues within 4Å: Chain G: L.41, G.42, Y.43, V.50, A.61, K.63, L.106, E.107, L.108, C.109, L.111, N.112, D.115, Q.162, L.165, S.188, D.189 9 PLIP interactions: 9 interactions with chain G Hydrophobic interactions: G:V.50, G:L.106, G:L.165 Hydrogen bonds: G:C.109, G:C.109, G:C.109, G:N.112, G:S.188, G:D.189 APJ.8: 17 residues within 4Å: Chain H: L.41, G.42, Y.43, V.50, A.61, K.63, L.106, E.107, L.108, C.109, L.111, N.112, D.115, Q.162, L.165, S.188, D.189 9 PLIP interactions: 9 interactions with chain H Hydrophobic interactions: H:V.50, H:L.106, H:L.165 Hydrogen bonds: H:C.109, H:C.109, H:C.109, H:N.112, H:S.188, H:D.189 APJ.9: 17 residues within 4Å: Chain I: L.41, G.42, Y.43, V.50, A.61, K.63, L.106, E.107, L.108, C.109, L.111, N.112, D.115, Q.162, L.165, S.188, D.189 9 PLIP interactions: 9 interactions with chain I Hydrophobic interactions: I:V.50, I:L.106, I:L.165 Hydrogen bonds: I:C.109, I:C.109, I:C.109, I:N.112, I:S.188, I:D.189 APJ.10: 17 residues within 4Å: Chain J: L.41, G.42, Y.43, V.50, A.61, K.63, L.106, E.107, L.108, C.109, L.111, N.112, D.115, Q.162, L.165, S.188, D.189 9 PLIP interactions: 9 interactions with chain J Hydrophobic interactions: J:V.50, J:L.106, J:L.165 Hydrogen bonds: J:C.109, J:C.109, J:C.109, J:N.112, J:S.188, J:D.189 APJ.11: 16 residues within 4Å: Chain K: L.41, G.42, Y.43, A.61, K.63, L.106, E.107, L.108, C.109, L.111, N.112, D.115, Q.162, L.165, S.188, D.189 8 PLIP interactions: 8 interactions with chain K Hydrophobic interactions: K:L.106, K:L.165 Hydrogen bonds: K:C.109, K:C.109, K:C.109, K:N.112, K:S.188, K:D.189 APJ.12: 16 residues within 4Å: Chain L: L.41, G.42, Y.43, A.61, K.63, L.106, E.107, L.108, C.109, L.111, N.112, D.115, Q.162, L.165, S.188, D.189 8 PLIP interactions: 8 interactions with chain L Hydrophobic interactions: L:L.106, L:L.165 Hydrogen bonds: L:C.109, L:C.109, L:C.109, L:N.112, L:S.188, L:D.189 APJ.13: 16 residues within 4Å: Chain M: L.41, G.42, Y.43, A.61, K.63, L.106, E.107, L.108, C.109, L.111, N.112, D.115, Q.162, L.165, S.188, D.189 8 PLIP interactions: 8 interactions with chain M Hydrophobic interactions: M:L.106, M:L.165 Hydrogen bonds: M:C.109, M:C.109, M:C.109, M:N.112, M:S.188, M:D.189 APJ.14: 16 residues within 4Å: Chain N: L.41, G.42, Y.43, A.61, K.63, L.106, E.107, L.108, C.109, L.111, N.112, D.115, Q.162, L.165, S.188, D.189 8 PLIP interactions: 8 interactions with chain N Hydrophobic interactions: N:L.106, N:L.165 Hydrogen bonds: N:C.109, N:C.109, N:C.109, N:N.112, N:S.188, N:D.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Korennykh, A.V. et al., The unfolded protein response signals through high-order assembly of Ire1. Nature (2009)

Release Date

2008-12-16

Peptides

Serine/threonine-protein kinase/endoribonuclease IRE1: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

Serine/threonine-protein kinase/endoribonuclease IRE1

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