SMTL ID : 3fe8.1

Crystal structure of a pheromone binding protein from Apis mellifera with a serendipitous ligand soaked at pH 4.0

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x CMJ: (20S)-20-methyldotetracontane(Non-covalent)

CMJ.1: 21 residues within 4Å: Chain A: W.4, P.6, E.8, V.9, V.13, M.49, L.53, F.56, L.58, M.70, L.73, L.74, R.81, A.82, M.86, L.104, V.108, V.115, W.116, F.117 Ligands: GOL.2 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:W.4, A:P.6, A:V.13, A:M.49, A:L.53, A:L.53, A:F.56, A:F.56, A:L.58, A:L.73, A:L.73, A:L.73, A:L.74, A:L.74, A:R.81, A:L.104, A:V.108, A:W.116, A:W.116

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: E.8, G.72, L.73 Ligands: CMJ.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.8 Water bridges: A:G.72

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: N.64, V.65, L.90, P.91, T.92 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pesenti, M.E. et al., Queen bee pheromone binding protein pH induced domain-swapping favors pheromone release. To be Published

Release Date

2009-12-01

Peptides

Pheromone-binding protein ASP1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pheromone-binding protein ASP1

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