SMTL ID : 3fg1.3 (4 other biounits)

Crystal structure of Delta413-417:GS LOX

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 5 residues within 4Å: Chain A: H.387, H.392, H.573, N.577, I.696 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.387, A:H.392, A:H.573, H2O.4

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: H.20, G.22, D.82, D.84 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.20, A:G.22, A:D.82, A:D.82, A:D.84, H2O.11 CA.3: 1 residues within 4Å: Chain A: E.54 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.54, H2O.2, H2O.2, H2O.6 CA.18: 1 residues within 4Å: Chain A: N.658 No protein-ligand interaction detected (PLIP)

6 x ACY: ACETIC ACID(Non-functional Binders)

ACY.4: 6 residues within 4Å: Chain A: F.235, Q.238, F.239, E.378, H.583, N.589 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.235, A:Q.238, A:F.239 Water bridges: A:N.589, A:N.589 Salt bridges: A:H.583 ACY.5: 4 residues within 4Å: Chain A: H.164, S.178, Y.181, Q.182 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.182 Salt bridges: A:H.164 ACY.6: 4 residues within 4Å: Chain A: F.633, Y.639, E.688, R.689 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.688, A:R.689 Salt bridges: A:R.689 ACY.7: 5 residues within 4Å: Chain A: L.192, G.195, S.196, T.199, A.621 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.621 Hydrogen bonds: A:L.192 Water bridges: A:T.199 ACY.8: 7 residues within 4Å: Chain A: Q.383, S.444, L.445, Y.584, A.592, A.623, V.627 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.627 ACY.9: 6 residues within 4Å: Chain A: D.208, H.211, A.226, D.227, W.229, H.230 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.208 Salt bridges: A:H.211, A:H.230

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 2 residues within 4Å: Chain A: D.662, E.665 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.662, A:E.665 GOL.11: 5 residues within 4Å: Chain A: N.203, W.204, D.205, S.206, D.209 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.203, A:D.205, A:D.205 GOL.12: 6 residues within 4Å: Chain A: N.266, L.269, D.270, R.271, G.272, K.273 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.266, A:N.266, A:L.269, A:G.272 GOL.13: 6 residues within 4Å: Chain A: G.506, I.509, A.510, R.555, E.556, K.559 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.559, A:K.559 GOL.14: 4 residues within 4Å: Chain A: A.25, D.44, K.45, G.46 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.25, A:D.44, A:G.46 Water bridges: A:K.45, A:G.46 GOL.15: 2 residues within 4Å: Chain A: L.254, S.256 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.254

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.16: 6 residues within 4Å: Chain A: E.119, A.120, K.414, W.648, E.649, D.650 Ligand excluded by PLIP CL.17: 4 residues within 4Å: Chain A: T.38, D.39, G.60, F.61 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neau, D.B. et al., The 1.85 A structure of an 8R-lipoxygenase suggests a general model for lipoxygenase product specificity. Biochemistry (2009)

Release Date

2009-08-18

Peptides

Allene oxide synthase-lipoxygenase protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Allene oxide synthase-lipoxygenase protein

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