SMTL ID : 3fmg.1

Structure of rotavirus outer capsid protein VP7 trimer in complex with a neutralizing Fab

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-3-3-3-mer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain C: D.251 Chain I: Q.127, N.132, K.133, D.178, V.179, D.181 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain I Metal complexes: C:D.251, I:D.178 CA.2: 4 residues within 4Å: Chain C: D.45 Chain I: G.156, T.164, E.166 4 PLIP interactions: 3 interactions with chain I, 1 interactions with chain C Metal complexes: I:G.156, I:T.164, I:E.166, C:D.45 CA.3: 7 residues within 4Å: Chain C: Q.127, N.132, K.133, D.178, V.179, D.181 Chain F: D.251 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain F Metal complexes: C:D.178, F:D.251 CA.4: 4 residues within 4Å: Chain C: G.156, T.164, E.166 Chain F: D.45 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain F Metal complexes: C:G.156, C:T.164, C:E.166, F:D.45 CA.5: 7 residues within 4Å: Chain F: Q.127, N.132, K.133, D.178, V.179, D.181 Chain I: D.251 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain I Metal complexes: F:D.178, I:D.251 CA.6: 4 residues within 4Å: Chain F: G.156, T.164, E.166 Chain I: D.45 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain I Metal complexes: F:G.156, F:T.164, F:E.166, I:D.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aoki, S.T. et al., Structure of rotavirus outer-layer protein VP7 bound with a neutralizing Fab. Science (2009)

Release Date

2009-06-23

Peptides

Fab of neutralizing antibody 4F8, light chain: ADG
Fab of neutralizing antibody 4F8, heavy chain: BEH
Glycoprotein VP7: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

D
L

G
L

B
H

E
H

H
H

C
A

F
A

I
A

Fab of neutralizing antibody 4F8, light chain

Fab of neutralizing antibody 4F8, heavy chain

Glycoprotein VP7

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