SMTL ID : 3foc.1

Tryptophanyl-tRNA synthetase from Giardia lamblia

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

homo-tetramer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: R.153, K.157, D.437, T.438 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.153, A:K.157, A:T.438, A:T.438 Water bridges: A:T.439 GOL.4: 4 residues within 4Å: Chain C: R.153, K.157, D.437, T.438 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.153, C:K.157, C:T.438, C:T.438 Water bridges: C:T.439

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: G.44, R.77, R.302, R.305 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.77, A:R.302, A:R.305 SO4.3: 4 residues within 4Å: Chain B: F.43, G.44, R.77, R.302 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.77, B:R.302 SO4.5: 4 residues within 4Å: Chain C: G.44, R.77, R.302, R.305 3 PLIP interactions: 3 interactions with chain C Salt bridges: C:R.77, C:R.302, C:R.305 SO4.6: 4 residues within 4Å: Chain D: F.43, G.44, R.77, R.302 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:R.77, D:R.302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arakaki, T.L. et al., The structure of tryptophanyl-tRNA synthetase from Giardia lamblia reveals divergence from eukaryotic homologs. J.Struct.Biol. (2010)

Release Date

2009-01-13

Peptides

Tryptophanyl-tRNA synthetase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Tryptophanyl-tRNA synthetase