- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x CTP: CYTIDINE-5'-TRIPHOSPHATE(Non-covalent)
- 3 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.2: 4 residues within 4Å:- Chain A: P.22, R.29, P.31, Y.32
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.29, A:E.33
EPE.8: 4 residues within 4Å:- Chain B: P.22, R.29, P.31, Y.32
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.29, B:E.33
EPE.14: 4 residues within 4Å:- Chain C: P.22, R.29, P.31, Y.32
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.29, C:E.33
- 3 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 8 residues within 4Å:- Chain A: R.147
- Chain B: R.147
- Chain C: R.147
- Ligands: MG.6, CL.9, MG.12, CL.15, MG.18
Ligand excluded by PLIPCL.9: 8 residues within 4Å:- Chain A: R.147
- Chain B: R.147
- Chain C: R.147
- Ligands: CL.3, MG.6, MG.12, CL.15, MG.18
Ligand excluded by PLIPCL.15: 8 residues within 4Å:- Chain A: R.147
- Chain B: R.147
- Chain C: R.147
- Ligands: CL.3, MG.6, CL.9, MG.12, MG.18
Ligand excluded by PLIP- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 1 residues within 4Å:- Chain A: R.83
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.83
SO4.10: 1 residues within 4Å:- Chain B: R.83
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:R.83
SO4.16: 1 residues within 4Å:- Chain C: R.83
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.83
- 6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.5: 6 residues within 4Å:- Chain A: A.38, H.39, S.40, G.42, H.47
- Ligands: CTP.1
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:S.40
MG.6: 5 residues within 4Å:- Ligands: CL.3, CL.9, MG.12, CL.15, MG.18
No protein-ligand interaction detected (PLIP)MG.11: 6 residues within 4Å:- Chain B: A.38, H.39, S.40, G.42, H.47
- Ligands: CTP.7
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:S.40
MG.12: 5 residues within 4Å:- Ligands: CL.3, MG.6, CL.9, CL.15, MG.18
No protein-ligand interaction detected (PLIP)MG.17: 6 residues within 4Å:- Chain C: A.38, H.39, S.40, G.42, H.47
- Ligands: CTP.13
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:S.40
MG.18: 5 residues within 4Å:- Ligands: CL.3, MG.6, CL.9, MG.12, CL.15
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase IspF complexed with Cytidine Triphosphate. To be Published
- Release Date
- 2009-02-03
- Peptides
- 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x CTP: CYTIDINE-5'-TRIPHOSPHATE(Non-covalent)
- 3 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase IspF complexed with Cytidine Triphosphate. To be Published
- Release Date
- 2009-02-03
- Peptides
- 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A